# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1m65A 245 2.64e-18 c.6.3.1 84847 2anuA 255 3.91e-17 c.6.3.1 127058 2yxoA 267 7.82e-16 2hnhA 910 1.72e-08 1vflA 356 0.1356 c.1.9.1 120041 2rduA 387 0.3131 1fkx 349 0.4891 2nzlA 392 0.5405 1w1iE 357 0.6050 c.1.9.1 109051 2pgfA 371 1.608 1a4mA 349 1.696 c.1.9.1 29014 2du2A 374 2.447 2amxA 376 4.371 c.1.9.1 127024 1h5vA 304 9.344 c.1.8.3 70898 1ceoA 343 9.524 c.1.8.3 28808 1ltdA 506 10.33 c.1.4.1,d.120.1.1 28618,41086 1qwgA 251 13.98 c.1.27.1 96473 2i5gA 325 15.06 1i60A 278 15.66 c.1.15.4 71118 1zgdA 312 16.28 2d13A 227 17.63 c.26.2.1 131121 1tv8A 340 17.69 c.1.28.3 107352 1acmA 310 18.38 c.78.1.1,c.78.1.1 35180,35181 2qw5A 335 19.49 1ojxA 263 20.30 c.1.10.1 93164 1w8sA 263 20.58 c.1.10.1 120744 2o55A 258 21.05 2eplX 627 21.19 1goxA 369 21.82 c.1.4.1 28607 1ekxA 311 21.90 c.78.1.1,c.78.1.1 35088,35089 2qulA 290 23.27 8atcA 310 23.47 c.78.1.1,c.78.1.1 35132,35133 3b40A 417 24.02 3ciwA 348 25.28 2yxbA 161 25.73 7a3hA 303 25.91 c.1.8.3 28817 1i52A 236 26.25 c.68.1.13 61767 3b79A 129 26.32 1bh6A 274 27.24 c.41.1.1 32487 3d0cA 314 27.71 2g0wA 296 28.11 c.1.15.4 134503 1hw6A 278 29.98 c.1.7.1 61296 1h5yA 253 32.85 c.1.2.1 65638 3be7A 408 33.40 1ccwA 137 34.92 c.23.6.1 31238 2iyeA 263 36.11 1wruA 379 36.29 1bf6A 291 36.30 c.1.9.3 29065 2dfaA 250 37.35 c.6.2.5 131469 3csuA 310 39.00 c.78.1.1,c.78.1.1 35094,35095 1ny1A 240 39.43 c.6.2.3 86395 2fymA 431 41.33 c.1.11.1,d.54.1.1 134379,134380 1k6wA 426 41.34 b.92.1.2,c.1.9.5 68236,68237 2rghA 571 41.53 1geqA 248 41.85 c.1.2.4 28589 2o14A 375 42.53 1pl8A 356 42.71 b.35.1.2,c.2.1.1 94878,94879 2fb2A 340 42.87 1pnsC 206 43.38 i.1.1.1 88170 3cgvA 397 46.08 2nlyA 245 48.76 c.6.2.7 138364 2obnA 349 48.84 1nulA 152 49.15 c.61.1.1 34011 1gs5A 258 49.22 c.73.1.2 70395 1npdA 288 49.39 c.2.1.7,c.58.1.5 80681,80682 1zq6A 359 50.00 1ng4A 390 52.19 c.3.1.2,d.16.1.3 85666,85667 2pa6A 427 52.59 2pg3A 232 52.90 1gkpA 458 52.99 b.92.1.3,c.1.9.6 70231,70232 2ragA 417 53.12 2cc0A 195 54.57 c.6.2.3 130209 2nliA 368 54.76 1gciA 269 54.93 c.41.1.1 32503 2ggtA 164 55.98 c.47.1.10 135156 2px7A 236 56.35 2h9aB 310 57.77 1nf3C 128 57.91 b.36.1.1 85596 1xw8A 252 60.25 c.6.2.5 116111 1wa3A 205 62.13 c.1.10.1 120802 1gsa 316 62.30 2al2A 436 62.36 c.1.11.1,d.54.1.1 126953,126954 3grsA 478 63.34 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2akzA 439 63.60 c.1.11.1,d.54.1.1 126944,126945 2bgsA 344 66.18 1xhcA 367 66.63 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1ic6A 279 67.87 c.41.1.1 62257 2id0A 644 68.14 1hv8A 367 68.30 c.37.1.19,c.37.1.19 32405,32406 2e7yA 280 68.56 1zkpA 268 68.68 d.157.1.9 125205 2ptzA 432 69.15 1v77A 212 69.24 c.6.3.2 108402 1z85A 234 70.13 1xi3A 215 70.50 c.1.3.1 109601 1ituA 369 70.90 c.1.9.7 71423 2r8wA 332 71.10 2hk0A 309 71.40 2ehhA 294 72.20 2b81A 323 73.69 1ml4A 308 73.81 c.78.1.1,c.78.1.1 79255,79256 1fl2A 310 74.15 c.3.1.5,c.3.1.5 59869,59870 2i2wA 212 74.98 1hyuA 521 74.98 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1wbhA 214 75.64 c.1.10.1 120845 2al1A 436 76.11 c.1.11.1,d.54.1.1 126949,126950 2yv1A 294 76.82 1g0cA 364 77.07 c.1.8.3 60165 1rd5A 262 77.85 c.1.2.4 111772 2d8aA 348 78.00 2dy0A 190 78.18 1vbjA 281 78.20 1ra0A 430 78.55 b.92.1.2,c.1.9.5 111756,111757 1y56B 382 78.59 1qauA 112 78.97 b.36.1.1 24779 1vl2A 421 80.11 c.26.2.1,d.210.1.1 108708,108709 1vfgA 390 81.69 a.173.1.1,d.218.1.4 108570,108571 1xuuA 349 84.11 b.85.1.1,c.1.10.6 116067,116068 1ujpA 271 84.58 c.1.2.4 99462 2ix0A 663 85.56 2agtA 319 85.77 2i6uA 307 85.97 2q9uA 414 86.33 1ho1A 242 86.69 c.1.24.1 61097 1e3jA 352 87.02 b.35.1.2,c.2.1.1 24765,29781 2pyxA 526 87.40 1rzmA 338 87.47 c.1.10.4 105137 1iyxA 432 87.74 c.1.11.1,d.54.1.1 83815,83816 1erzA 303 88.20 d.160.1.2 59498 1jb9A 316 89.62 b.43.4.2,c.25.1.1 62840,62841 1ionA 243 89.63 c.37.1.10 62633