# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1m65A 245 1.53e-20 c.6.3.1 84847 2anuA 255 7.99e-20 c.6.3.1 127058 2yxoA 267 2.53e-17 2hnhA 910 3.82e-09 1vflA 356 0.1516 c.1.9.1 120041 1fkx 349 0.2096 1w1iE 357 0.2990 c.1.9.1 109051 2rduA 387 0.4286 2pgfA 371 0.6364 2nzlA 392 0.6448 1a4mA 349 0.9073 c.1.9.1 29014 2amxA 376 2.541 c.1.9.1 127024 1ceoA 343 2.869 c.1.8.3 28808 2du2A 374 2.922 2o55A 258 9.97 1bh6A 274 10.10 c.41.1.1 32487 2g0wA 296 12.17 c.1.15.4 134503 2obnA 349 12.65 2d13A 227 14.61 c.26.2.1 131121 3ciwA 348 15.52 1h5vA 304 15.98 c.1.8.3 70898 1w8sA 263 16.47 c.1.10.1 120744 2qw5A 335 19.15 1wruA 379 20.00 1gs5A 258 22.32 c.73.1.2 70395 2ggtA 164 22.58 c.47.1.10 135156 1pnsC 206 24.83 i.1.1.1 88170 3b40A 417 25.19 1eceA 358 25.47 c.1.8.3 28813 1npdA 288 26.98 c.2.1.7,c.58.1.5 80681,80682 1xhcA 367 29.26 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2qulA 290 29.28 1ojxA 263 29.53 c.1.10.1 93164 1dbiA 280 29.97 c.41.1.1 32543 2pz0A 252 29.98 1qwgA 251 31.31 c.1.27.1 96473 1nf3C 128 33.08 b.36.1.1 85596 1i60A 278 34.15 c.1.15.4 71118 1vd6A 224 37.11 c.1.18.3 119991 1fjgC 239 37.52 d.52.3.1,d.53.1.1 38831,38839 1ionA 243 38.45 c.37.1.10 62633 1tv8A 340 38.59 c.1.28.3 107352 2rghA 571 38.79 1zgdA 312 39.38 1gkpA 458 40.10 b.92.1.3,c.1.9.6 70231,70232 3b79A 129 41.96 7a3hA 303 45.78 c.1.8.3 28817 1fl2A 310 50.62 c.3.1.5,c.3.1.5 59869,59870 2yxbA 161 50.97 1ic6A 279 53.88 c.41.1.1 62257 1goxA 369 56.19 c.1.4.1 28607 1edgA 380 56.28 c.1.8.3 28807 2qtwB 546 56.64 1gv4A 528 56.81 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 3be7A 408 57.47 2o14A 375 57.83 1nuuA 252 58.65 c.26.1.3 86209 1i52A 236 59.44 c.68.1.13 61767 2jilA 97 59.76 1z85A 234 61.18 1n8jA 186 62.05 c.47.1.10 85401 2qkvA 96 62.33 1o12A 376 62.60 b.92.1.5,c.1.9.10 80758,80759 2b7kA 200 65.79 c.47.1.10 128042 1nulA 152 65.88 c.61.1.1 34011 1gr0A 367 69.10 c.2.1.3,d.81.1.3 70379,70380 2i5gA 325 69.81 2px7A 236 70.82 2nliA 368 71.20 1ccwA 137 72.31 c.23.6.1 31238 2dfaA 250 72.33 c.6.2.5 131469 2vguA 407 72.69 1cqqA 180 74.00 b.47.1.4 26422 1to2E 281 74.07 c.41.1.1 112595 1gciA 269 74.41 c.41.1.1 32503 2pg3A 232 75.75 2ocsA 88 76.46 2cc0A 195 76.72 c.6.2.3 130209 1ltdA 506 77.89 c.1.4.1,d.120.1.1 28618,41086 3d0cA 314 80.51 1qauA 112 82.18 b.36.1.1 24779 1pdr 99 82.68 2nuhA 118 83.77 1qq2A 199 84.04 c.47.1.10 33064 2pa6A 427 84.63 1bia 321 86.42 1pl8A 356 86.72 b.35.1.2,c.2.1.1 94878,94879 1ny1A 240 87.22 c.6.2.3 86395 2egzA 219 87.32 2z00A 426 87.55 2bvcA 486 89.64 d.15.9.1,d.128.1.1 129243,129244 1wdkC 390 89.82 c.95.1.1,c.95.1.1 109258,109259 2i7gA 376 89.96