# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1m65A 245 1.32e-20 c.6.3.1 84847 2anuA 255 9.48e-20 c.6.3.1 127058 2yxoA 267 2.34e-17 2hnhA 910 6.45e-10 1vflA 356 0.1355 c.1.9.1 120041 1fkx 349 0.1914 1w1iE 357 0.2053 c.1.9.1 109051 2rduA 387 0.4290 2nzlA 392 1.040 1a4mA 349 1.211 c.1.9.1 29014 2pgfA 371 1.465 1ceoA 343 2.775 c.1.8.3 28808 2amxA 376 3.540 c.1.9.1 127024 2du2A 374 3.647 2d13A 227 7.256 c.26.2.1 131121 3ciwA 348 7.716 1qwgA 251 10.25 c.1.27.1 96473 2qw5A 335 12.19 2g0wA 296 13.21 c.1.15.4 134503 1w8sA 263 13.83 c.1.10.1 120744 2o55A 258 14.19 3b79A 129 14.34 1h5vA 304 15.19 c.1.8.3 70898 1ekxA 311 16.18 c.78.1.1,c.78.1.1 35088,35089 1i60A 278 16.85 c.1.15.4 71118 2obnA 349 17.25 1xhcA 367 17.87 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2rghA 571 18.09 2qulA 290 19.20 8atcA 310 19.34 c.78.1.1,c.78.1.1 35132,35133 3be7A 408 20.46 2ggtA 164 20.66 c.47.1.10 135156 1wruA 379 21.82 1tv8A 340 23.76 c.1.28.3 107352 3csuA 310 24.54 c.78.1.1,c.78.1.1 35094,35095 1acmA 310 25.76 c.78.1.1,c.78.1.1 35180,35181 2o14A 375 27.11 1zgdA 312 27.32 7a3hA 303 29.10 c.1.8.3 28817 1gs5A 258 29.55 c.73.1.2 70395 1ny1A 240 32.85 c.6.2.3 86395 1vd6A 224 33.00 c.1.18.3 119991 1ojxA 263 33.19 c.1.10.1 93164 3b40A 417 34.26 1hw6A 278 34.30 c.1.7.1 61296 1ccwA 137 36.30 c.23.6.1 31238 1edgA 380 36.91 c.1.8.3 28807 1gkpA 458 38.26 b.92.1.3,c.1.9.6 70231,70232 2dfaA 250 39.22 c.6.2.5 131469 2iw0A 254 39.35 c.6.2.3 137737 1nf3C 128 39.47 b.36.1.1 85596 1eceA 358 40.21 c.1.8.3 28813 1bh6A 274 42.52 c.41.1.1 32487 2cc0A 195 43.21 c.6.2.3 130209 1npdA 288 44.71 c.2.1.7,c.58.1.5 80681,80682 2j13A 247 46.56 c.6.2.3 137934 2dy0A 190 47.29 2nlyA 245 48.00 c.6.2.7 138364 2yxbA 161 49.46 1erzA 303 52.18 d.160.1.2 59498 2id0A 644 52.69 2px7A 236 52.78 3grsA 478 53.38 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2z00A 426 53.74 2h9aB 310 54.20 1ltdA 506 55.59 c.1.4.1,d.120.1.1 28618,41086 2i5gA 325 56.50 2vguA 407 56.90 1z85A 234 57.02 2e7yA 280 57.56 1wa3A 205 57.60 c.1.10.1 120802 1m6sA 347 57.88 c.67.1.1 78701 1ng4A 390 58.18 c.3.1.2,d.16.1.3 85666,85667 1pn2A 280 59.72 d.38.1.4,d.38.1.4 94930,94931 2i6uA 307 62.21 1m5wA 243 64.23 c.1.24.1 84836 1nuuA 252 65.25 c.26.1.3 86209 2fb2A 340 65.33 1gv4A 528 65.93 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 1vfgA 390 66.07 a.173.1.1,d.218.1.4 108570,108571 1tif 78 66.10 2nxwA 565 67.02 2egzA 219 67.09 1zq6A 359 67.60 2pz0A 252 68.27 1q1rA 431 68.57 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2qkvA 96 68.98 1bf6A 291 69.03 c.1.9.3 29065 2ix0A 663 69.12 1zkpA 268 69.54 d.157.1.9 125205 2yv1A 294 69.86 2ohwA 133 71.76 1i52A 236 72.36 c.68.1.13 61767 1fc4A 401 73.02 c.67.1.4 59760 2i2wA 212 73.11 1dbiA 280 74.33 c.41.1.1 32543 2fymA 431 74.45 c.1.11.1,d.54.1.1 134379,134380 1qcwA 410 74.82 c.1.4.1 28622 2hkeA 380 75.88 3cgvA 397 78.50 1hyuA 521 78.50 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1nhsA 447 78.51 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1p1mA 406 78.69 b.92.1.4,c.1.9.9 87696,87697 1pnsC 206 81.62 i.1.1.1 88170 2hk0A 309 82.46 1fjgC 239 86.63 d.52.3.1,d.53.1.1 38831,38839 2jg2A 422 86.98 1rvgA 305 87.36 c.1.10.2 97920 2akzA 439 87.64 c.1.11.1,d.54.1.1 126944,126945 1ho1A 242 87.80 c.1.24.1 61097 1m41A 380 88.15 c.1.16.4 78595 1bia 321 89.91