# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1m65A 245 1.30e-19 c.6.3.1 84847 2anuA 255 8.68e-19 c.6.3.1 127058 2yxoA 267 1.32e-16 2hnhA 910 4.29e-09 1vflA 356 0.3157 c.1.9.1 120041 1fkx 349 0.5174 2rduA 387 0.5336 1w1iE 357 0.8275 c.1.9.1 109051 2nzlA 392 0.8801 2pgfA 371 1.971 2du2A 374 3.164 1a4mA 349 3.279 c.1.9.1 29014 2amxA 376 3.608 c.1.9.1 127024 1ceoA 343 4.888 c.1.8.3 28808 3ciwA 348 8.592 1qwgA 251 11.23 c.1.27.1 96473 2d13A 227 14.48 c.26.2.1 131121 1xhcA 367 14.87 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2o55A 258 15.34 3b79A 129 16.23 1h5vA 304 16.72 c.1.8.3 70898 1i60A 278 21.81 c.1.15.4 71118 1pnsC 206 24.48 i.1.1.1 88170 1wruA 379 25.65 1w8sA 263 27.55 c.1.10.1 120744 2rghA 571 27.56 2qulA 290 28.30 2qw5A 335 28.77 2g0wA 296 29.37 c.1.15.4 134503 2pz0A 252 29.38 7a3hA 303 29.82 c.1.8.3 28817 2o14A 375 30.52 2id0A 644 32.95 1tv8A 340 32.97 c.1.28.3 107352 1bh6A 274 33.50 c.41.1.1 32487 1ojxA 263 34.74 c.1.10.1 93164 1gkpA 458 34.86 b.92.1.3,c.1.9.6 70231,70232 2ggtA 164 37.46 c.47.1.10 135156 1ny1A 240 37.76 c.6.2.3 86395 1zgdA 312 38.40 1nf3C 128 38.81 b.36.1.1 85596 1fjgC 239 39.43 d.52.3.1,d.53.1.1 38831,38839 1fl2A 310 40.79 c.3.1.5,c.3.1.5 59869,59870 3b40A 417 41.32 1vd6A 224 42.06 c.1.18.3 119991 2iw0A 254 44.45 c.6.2.3 137737 3be7A 408 45.90 3cgvA 397 46.60 1eceA 358 47.57 c.1.8.3 28813 2yv1A 294 47.90 1ng4A 390 48.44 c.3.1.2,d.16.1.3 85666,85667 1npdA 288 48.63 c.2.1.7,c.58.1.5 80681,80682 2obnA 349 49.15 2i7gA 376 49.48 2h9aB 310 51.58 1hw6A 278 52.01 c.1.7.1 61296 1edgA 380 52.27 c.1.8.3 28807 1acmA 310 53.81 c.78.1.1,c.78.1.1 35180,35181 2fymA 431 55.96 c.1.11.1,d.54.1.1 134379,134380 1ekxA 311 56.72 c.78.1.1,c.78.1.1 35088,35089 1h5yA 253 57.62 c.1.2.1 65638 2cc0A 195 58.34 c.6.2.3 130209 1dbiA 280 59.41 c.41.1.1 32543 2iyeA 263 59.44 2i5gA 325 60.85 1q1rA 431 60.90 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1goxA 369 60.93 c.1.4.1 28607 1nuuA 252 61.02 c.26.1.3 86209 1ccwA 137 61.45 c.23.6.1 31238 2ix0A 663 61.72 2yxbA 161 62.00 1ltdA 506 62.06 c.1.4.1,d.120.1.1 28618,41086 2egzA 219 63.87 2akzA 439 65.44 c.1.11.1,d.54.1.1 126944,126945 2fb2A 340 65.82 3grsA 478 66.56 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 2qi2A 347 67.20 1zq6A 359 67.28 3csuA 310 67.54 c.78.1.1,c.78.1.1 35094,35095 2ohwA 133 68.00 1nulA 152 70.00 c.61.1.1 34011 1ic6A 279 70.05 c.41.1.1 62257 1gv4A 528 70.74 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 2qkvA 96 71.27 2pa6A 427 72.35 1ionA 243 72.68 c.37.1.10 62633 1zk7A 467 73.00 1m5wA 243 75.99 c.1.24.1 84836 1qq2A 199 76.90 c.47.1.10 33064 1erzA 303 77.84 d.160.1.2 59498 1vfgA 390 79.20 a.173.1.1,d.218.1.4 108570,108571 2px7A 236 79.41 2z00A 426 79.73 1rzmA 338 79.92 c.1.10.4 105137 2j13A 247 80.02 c.6.2.3 137934 1hyuA 521 80.37 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 3d0cA 314 80.94 1m6sA 347 83.54 c.67.1.1 78701 2al2A 436 86.37 c.1.11.1,d.54.1.1 126953,126954 1bf6A 291 88.12 c.1.9.3 29065 1gs5A 258 88.45 c.73.1.2 70395 2i6uA 307 89.13 2vguA 407 89.14