# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1m65A 245 5.22e-15 c.6.3.1 84847 2anuA 255 2.81e-14 c.6.3.1 127058 2yxoA 267 5.12e-13 2hnhA 910 7.15e-07 1fkx 349 0.3320 1w1iE 357 0.3424 c.1.9.1 109051 1a4mA 349 0.4978 c.1.9.1 29014 2pgfA 371 0.7380 1vflA 356 0.7682 c.1.9.1 120041 2amxA 376 1.036 c.1.9.1 127024 1qwgA 251 1.286 c.1.27.1 96473 2nzlA 392 2.432 1i60A 278 5.473 c.1.15.4 71118 3d0cA 314 7.551 1v77A 212 7.962 c.6.3.2 108402 1gkpA 458 9.470 b.92.1.3,c.1.9.6 70231,70232 3b40A 417 10.08 1p1mA 406 10.17 b.92.1.4,c.1.9.9 87696,87697 2qulA 290 11.19 2rduA 387 11.52 1emsA 440 11.83 d.13.1.1,d.160.1.1 37520,42086 2hy1A 280 12.39 1h5yA 253 12.40 c.1.2.1 65638 2obnA 349 13.48 2g0wA 296 14.30 c.1.15.4 134503 1ojxA 263 14.51 c.1.10.1 93164 2i5gA 325 14.83 1npdA 288 14.92 c.2.1.7,c.58.1.5 80681,80682 1h5vA 304 16.31 c.1.8.3 70898 1o12A 376 17.04 b.92.1.5,c.1.9.10 80758,80759 2du2A 374 17.51 2hk0A 309 17.91 3be7A 408 18.57 1b9zA 516 19.13 b.3.1.1,c.1.8.1 22528,28798 7a3hA 303 19.75 c.1.8.3 28817 2qw5A 335 20.05 1w8sA 263 20.62 c.1.10.1 120744 2r8wA 332 24.93 1gw9A 388 24.97 c.1.15.3 70658 2vhhA 405 25.06 2qahA 303 25.32 2yxbA 161 26.38 1k77A 260 27.20 c.1.15.5 72096 2j6vA 301 27.94 1erzA 303 28.34 d.160.1.2 59498 1j6pA 418 28.36 b.92.1.4,c.1.9.9 77089,77090 2ffiA 288 28.91 c.1.9.15 133385 1h1nA 305 28.97 c.1.8.3 70855 1itcA 516 31.83 b.3.1.1,c.1.8.1 83705,83706 1ccwA 137 31.91 c.23.6.1 31238 2ragA 417 32.99 1ujpA 271 33.51 c.1.2.4 99462 1gylA 369 34.44 c.1.4.1 28610 1ho1A 242 35.77 c.1.24.1 61097 1rd5A 262 36.16 c.1.2.4 111772 2v9dA 343 36.54 1ltdA 506 36.89 c.1.4.1,d.120.1.1 28618,41086 1ceoA 343 37.62 c.1.8.3 28808 1wzlA 585 37.89 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 2pcqA 283 39.35 1ji2A 585 40.21 b.1.18.2,b.71.1.1,c.1.8.1 71672,71673,71674 2tpsA 227 41.01 c.1.3.1 28591 1s2wA 295 41.29 c.1.12.7 98407 1m5wA 243 41.68 c.1.24.1 84836 1j6oA 268 42.59 c.1.9.12 77088 1xi3A 215 43.93 c.1.3.1 109601 1bag 425 45.54 1gkrA 458 46.04 b.92.1.3,c.1.9.6 70251,70252 2vgiA 528 46.09 1tx2A 297 46.79 c.1.21.1 107420 2dfaA 250 46.98 c.6.2.5 131469 1qfeA 252 47.67 c.1.10.1 29167 1fjgC 239 47.71 d.52.3.1,d.53.1.1 38831,38839 1bvzA 585 47.76 b.1.18.2,b.71.1.1,c.1.8.1 21856,27783,28770 1rpxA 230 47.92 c.1.2.2 28536 1hw6A 278 48.24 c.1.7.1 61296 1kcxA 518 49.44 b.92.1.3,c.1.9.6 90953,90954 1tyyA 339 49.67 c.72.1.1 112850 1qumA 285 49.74 c.1.15.1 29393 3b4uA 294 50.09 1be1 137 50.45 1nbaA 264 53.26 c.33.1.3 31753 2pz0A 252 54.48 1tqjA 230 54.59 c.1.2.2 107228 1n7kA 234 54.84 c.1.10.1 85374 1xkyA 301 55.36 c.1.10.1 122094 1ub3A 220 55.52 c.1.10.1 88395 1ra0A 430 55.56 b.92.1.2,c.1.9.5 111756,111757 2gokA 429 55.73 1gehA 444 56.32 c.1.14.1,d.58.9.1 65181,65182 2j13A 247 57.00 c.6.2.3 137934 1k6wA 426 57.81 b.92.1.2,c.1.9.5 68236,68237 2egzA 219 57.83 1vr6A 350 61.24 c.1.10.4 120439 1uf5A 303 61.92 d.160.1.2 107808 2ehhA 294 62.27 1j2rA 199 62.69 c.33.1.3 90788 1vk4A 298 62.83 c.72.1.1 100850 2o55A 258 63.07 2q02A 272 63.18 1vi2A 300 63.21 c.2.1.7,c.58.1.5 100726,100727 4xis 387 63.49 2g50A 530 63.56 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 2hjpA 290 64.20 1sgjA 284 64.46 c.1.12.5 105535 1xkgA 312 64.71 d.3.1.1 122081 2ftwA 521 64.76 b.92.1.3,c.1.9.6 134083,134084 1yrrA 382 65.96 b.92.1.5,c.1.9.10 123935,123936 2gwnA 452 67.22 1kyhA 276 68.80 c.72.1.4 73222 2ojpA 292 68.83 1gqnA 252 69.17 c.1.10.1 90514 1wbhA 214 69.79 c.1.10.1 120845 1xrsB 262 69.99 c.23.6.1,d.230.4.1 115884,115885 1escA 306 71.09 c.23.10.1 31334 1pnsC 206 71.39 i.1.1.1 88170 2yw3A 207 72.93 1w3iA 293 73.20 c.1.10.1 109152 2ddxA 333 73.37 1nytA 271 74.33 c.2.1.7,c.58.1.5 86417,86418 1l1qA 186 74.64 c.61.1.1 77653 1edgA 380 74.95 c.1.8.3 28807 1ituA 369 75.25 c.1.9.7 71423 2z2uA 311 75.79 2o14A 375 76.27 1qopA 268 76.95 c.1.2.4 28570 2ix0A 663 77.37 1ea9C 583 77.70 b.1.18.2,b.71.1.1,c.1.8.1 70087,70088,70089 1o5kA 306 78.22 c.1.10.1 92504 1h1yA 228 78.91 c.1.2.2 76506 1y44A 320 79.28 d.157.1.7 122608 1qtwA 285 79.62 c.1.15.1 29392 2p10A 286 81.54 2uxyA 341 82.54 2o7sA 523 82.55 1e8cA 498 83.72 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 2a6lA 292 84.40 c.1.10.1 126285 2i2wA 212 85.19 2c7yA 404 85.62 1u5hA 273 86.00 c.1.12.5 113037 2iw0A 254 86.45 c.6.2.3 137737 1ars 396 86.88 1afwA 393 88.09 c.95.1.1,c.95.1.1 35900,35901 2r91A 286 89.29