# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 6.75e-15 2anuA 255 7.19e-15 c.6.3.1 127058 1m65A 245 2.48e-14 c.6.3.1 84847 2hnhA 910 1.16e-11 1v77A 212 2.85e-06 c.6.3.2 108402 2qahA 303 0.06216 2z00A 426 1.199 1vc4A 254 1.823 c.1.2.4 100557 2gzxA 265 2.109 2f6kA 307 2.164 c.1.9.15 133047 1j6oA 268 2.416 c.1.9.12 77088 1o12A 376 2.590 b.92.1.5,c.1.9.10 80758,80759 2pg3A 232 2.716 2ffiA 288 3.677 c.1.9.15 133385 2icsA 379 4.035 b.92.1.8,c.1.9.14 137241,137242 3cjpA 272 7.439 1rk6A 496 7.466 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 2gokA 429 9.001 1kkhA 317 9.520 d.14.1.5,d.58.26.3 72645,72646 1zzmA 259 9.818 c.1.9.12 125911 2vc7A 314 10.47 2driA 271 10.51 c.93.1.1 35637 1qtwA 285 10.95 c.1.15.1 29392 1xrtA 467 11.61 b.92.1.3,c.1.9.6 122258,122259 2i5gA 325 11.95 1gkrA 458 12.04 b.92.1.3,c.1.9.6 70251,70252 1xwyA 264 12.09 c.1.9.12 122411 2fb2A 340 12.12 1o0yA 260 12.35 c.1.10.1 80756 1yixA 265 12.64 c.1.9.12 123371 2gwnA 452 12.85 1k77A 260 13.20 c.1.15.5 72096 2j6vA 301 13.70 1yrrA 382 14.24 b.92.1.5,c.1.9.10 123935,123936 2guiA 194 14.94 c.55.3.5 135737 2dri 271 15.22 1e43A 483 18.43 b.71.1.1,c.1.8.1 59217,59218 2pgfA 371 19.57 1yw1A 442 20.20 c.1.16.4 124130 1b8oA 284 21.30 c.56.2.1 33762 1ht6A 405 21.38 b.71.1.1,c.1.8.1 83629,83630 1xhcA 367 21.70 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1vflA 356 21.85 c.1.9.1 120041 2gwgA 350 21.96 c.1.9.15 135805 1vyrA 364 22.14 c.1.4.1 108906 2dh2A 424 22.58 1cb0A 283 22.59 c.56.2.1 33790 1j53A 186 23.15 c.55.3.5 77076 2g0wA 296 23.18 c.1.15.4 134503 2qw5A 335 23.19 2qpxA 376 23.26 1v0lA 313 24.09 c.1.8.3 108207 1bqcA 302 25.04 c.1.8.3 28831 2qt3A 403 25.06 1lqaA 346 25.06 c.1.7.1 84674 1j54A 186 25.08 c.55.3.5 77077 2q09A 416 25.18 2ob3A 330 25.87 1hdiA 413 25.93 c.86.1.1 60964 2g3fA 421 26.17 1ituA 369 26.20 c.1.9.7 71423 1bli 483 26.32 3c86A 328 26.45 2a0nA 265 29.28 c.1.2.1 125961 1thfD 253 29.69 c.1.2.1 28535 2pa6A 427 30.17 1tvlA 454 30.25 c.1.16.4 107366 2o14A 375 30.66 2dvtA 327 31.07 c.1.9.15 131793 2puzA 419 31.10 1ra0A 430 31.99 b.92.1.2,c.1.9.5 111756,111757 2egxA 269 32.41 2h3hA 313 33.54 2q02A 272 35.16 1i60A 278 36.35 c.1.15.4 71118 1esc 306 36.75 1zosA 230 37.49 2a1fA 247 37.76 c.73.1.3 125991 1pyfA 312 37.79 c.1.7.1 95334 1a53 247 38.38 1rvkA 382 38.90 c.1.11.2,d.54.1.1 97928,97929 1tv8A 340 38.91 c.1.28.3 107352 2h0rA 216 39.36 1gsjA 258 39.62 c.73.1.2 70397 1ur4A 399 40.44 c.1.8.3 113402 1z41A 338 40.79 c.1.4.1 124421 1gkpA 458 40.94 b.92.1.3,c.1.9.6 70231,70232 16pkA 415 42.82 c.86.1.1 35454 1g94A 448 43.64 b.71.1.1,c.1.8.1 65169,65170 2hk0A 309 45.51 2yrrA 353 46.31 1qopA 268 47.39 c.1.2.4 28570 3ciwA 348 48.38 1n7kA 234 48.78 c.1.10.1 85374 1fxxA 482 49.04 c.55.3.5 33726 1yxyA 234 49.59 c.1.2.5 124203 1h5yA 253 49.98 c.1.2.1 65638 2ioyA 283 50.08 2qvcA 313 50.45 16pk 415 51.67 1ad1A 266 52.24 c.1.21.1 29668 1edg 380 56.82 2cz9A 350 57.11 1vjoA 393 57.11 c.67.1.3 100827 2yx0A 342 58.13 1qnrA 344 59.12 c.1.8.3 28834 3c6qA 311 59.97 1fobA 334 60.63 c.1.8.3 83255 2vhlA 396 61.09 1phpA 394 61.83 c.86.1.1 35452 2gouA 365 62.23 2f46A 156 62.35 1uok 558 64.07 1uokA 558 64.86 b.71.1.1,c.1.8.1 27801,28788 1n82A 331 65.68 c.1.8.3 91703 2hxpA 155 65.90 2akoA 251 66.11 c.73.1.3 126923 1uasA 362 66.98 b.71.1.1,c.1.8.1 88388,88389 2ze0A 555 67.38 1vzwA 244 67.54 c.1.2.1 120553 2al1A 436 67.60 c.1.11.1,d.54.1.1 126949,126950 2p1jA 186 68.25 1nq6A 302 69.28 c.1.8.3 92046 2dplA 308 69.57 1kczA 413 70.24 c.1.11.2,d.54.1.1 68451,68452 2q8xA 331 70.28 2j5vA 367 70.29 1hrkA 359 70.52 c.92.1.1 61228 2h1vA 310 71.77 2imgA 151 71.97 1xviA 275 72.02 c.108.1.10 116088 3bzwA 274 72.57 3b40A 417 72.65 2va1A 256 73.36 2amxA 376 73.44 c.1.9.1 127024 1gveA 327 73.86 c.1.7.1 70597 1yz4A 160 74.55 1zjaA 557 74.81 2cygA 312 74.82 c.1.8.3 131025 1ybdA 239 74.95 c.73.1.3 122884 1g57A 217 75.56 d.115.1.2 60253 1kkoA 413 75.76 c.1.11.2,d.54.1.1 68675,68676 1je0A 236 75.95 c.56.2.1 66581 3cnyA 301 76.61 3c8nA 356 76.84 1m5wA 243 76.96 c.1.24.1 84836 1nhsA 447 77.04 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1mxgA 435 77.24 b.71.1.1,c.1.8.1 85193,85194 1jq5A 370 77.24 e.22.1.2 67084 1wtaA 275 81.00 1ionA 243 81.28 c.37.1.10 62633 1uuqA 440 81.59 c.1.8.3 100015 2r0bA 154 82.01 2pkfA 334 82.76 2b81A 323 83.43 2dejA 350 83.56 1w8sA 263 83.85 c.1.10.1 120744 1iugA 352 84.48 c.67.1.3 90699 3b9oA 440 85.73 1f6yA 262 86.33 c.1.21.2 29673 1ymqA 261 86.40 c.108.1.10 123707 1wzaA 488 86.44 b.71.1.1,c.1.8.1 121489,121490 2pq8A 278 87.14 2bneA 241 89.02 c.73.1.3 128824 1rhcA 330 89.86 c.1.16.3 97468