# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.10e-15 2anuA 255 1.51e-15 c.6.3.1 127058 1m65A 245 5.94e-15 c.6.3.1 84847 2hnhA 910 8.55e-13 1v77A 212 2.02e-07 c.6.3.2 108402 2qahA 303 0.2457 1j6oA 268 1.180 c.1.9.12 77088 1vc4A 254 1.557 c.1.2.4 100557 2gzxA 265 1.931 2z00A 426 2.804 1kkhA 317 3.169 d.14.1.5,d.58.26.3 72645,72646 2f6kA 307 3.516 c.1.9.15 133047 2ffiA 288 3.550 c.1.9.15 133385 1qtwA 285 3.955 c.1.15.1 29392 2pg3A 232 4.306 2gokA 429 4.869 2vc7A 314 5.539 2g3fA 421 6.695 2icsA 379 7.112 b.92.1.8,c.1.9.14 137241,137242 1xwyA 264 7.201 c.1.9.12 122411 1yixA 265 8.902 c.1.9.12 123371 2qw5A 335 9.576 1o12A 376 9.585 b.92.1.5,c.1.9.10 80758,80759 1pyfA 312 10.14 c.1.7.1 95334 1rk6A 496 10.78 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 2fb2A 340 11.02 2g0wA 296 11.96 c.1.15.4 134503 2q02A 272 12.11 1h5yA 253 12.34 c.1.2.1 65638 2cz9A 350 13.72 1ybdA 239 13.74 c.73.1.3 122884 1o0yA 260 13.93 c.1.10.1 80756 2dejA 350 14.15 1thfD 253 14.47 c.1.2.1 28535 1yw1A 442 14.64 c.1.16.4 124130 2a1fA 247 16.34 c.73.1.3 125991 2pgfA 371 17.97 1gsjA 258 18.52 c.73.1.2 70397 2a0nA 265 18.62 c.1.2.1 125961 2egxA 269 19.14 1k77A 260 19.24 c.1.15.5 72096 2yx0A 342 19.58 2bneA 241 19.74 c.73.1.3 128824 1e43A 483 20.69 b.71.1.1,c.1.8.1 59217,59218 1zzmA 259 21.15 c.1.9.12 125911 2j6vA 301 22.83 1ionA 243 24.90 c.37.1.10 62633 1i60A 278 24.92 c.1.15.4 71118 2yrrA 353 25.50 2gwnA 452 25.86 1lqaA 346 27.01 c.1.7.1 84674 1tvlA 454 27.78 c.1.16.4 107366 1zosA 230 27.88 2akoA 251 28.84 c.73.1.3 126923 2dh2A 424 28.94 2driA 271 29.15 c.93.1.1 35637 2q09A 416 29.27 1qopA 268 29.84 c.1.2.4 28570 1y56B 382 31.51 2puzA 419 32.44 2gagB 405 32.67 2dri 271 34.06 2o14A 375 34.99 2guiA 194 35.64 c.55.3.5 135737 1a53 247 35.97 1qgoA 264 36.04 c.92.1.2 35596 1vyrA 364 36.77 c.1.4.1 108906 1vl2A 421 36.87 c.26.2.1,d.210.1.1 108708,108709 3c6qA 311 37.42 2ob3A 330 38.23 1ituA 369 38.48 c.1.9.7 71423 2hk0A 309 40.33 1mpyA 307 41.52 d.32.1.3,d.32.1.3 38508,38509 2qpxA 376 41.68 2ac7A 235 42.08 c.56.2.1 126543 1yacA 208 42.28 c.33.1.3 31757 1xrtA 467 42.29 b.92.1.3,c.1.9.6 122258,122259 1rhcA 330 42.40 c.1.16.3 97468 1rvkA 382 42.81 c.1.11.2,d.54.1.1 97928,97929 1fobA 334 42.98 c.1.8.3 83255 1w8sA 263 43.12 c.1.10.1 120744 2iswA 323 43.17 1cb0A 283 43.50 c.56.2.1 33790 1cl1A 395 43.63 c.67.1.3 34395 1tv8A 340 43.75 c.1.28.3 107352 1b8oA 284 45.02 c.56.2.1 33762 1o2dA 371 45.82 e.22.1.2 86591 1ht6A 405 45.88 b.71.1.1,c.1.8.1 83629,83630 3c8nA 356 46.36 2ioyA 283 46.38 1ur3M 319 47.22 c.1.7.1 99806 1ynpA 317 47.59 1muwA 386 47.64 c.1.15.3 79495 2gwgA 350 47.67 c.1.9.15 135805 1jysA 242 47.87 c.56.2.1 77216 1rrmA 386 48.36 e.22.1.2 105081 1vflA 356 48.87 c.1.9.1 120041 1xhcA 367 49.76 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2pa6A 427 50.51 3be7A 408 50.53 2i5gA 325 50.73 2amxA 376 51.62 c.1.9.1 127024 1odkA 235 52.07 c.56.2.1 86863 1a0cA 438 52.21 c.1.15.3 29529 1g5bA 221 52.49 d.159.1.3 60261 3cnyA 301 53.08 3b9oA 440 53.83 1gkrA 458 54.06 b.92.1.3,c.1.9.6 70251,70252 2va1A 256 55.78 1j31A 262 56.64 d.160.1.2 90808 2hfsA 332 56.76 1ur4A 399 57.00 c.1.8.3 113402 2cygA 312 57.48 c.1.8.3 131025 1bli 483 57.81 1i0dA 332 59.15 c.1.9.3 61487 2ip2A 334 61.00 1rzuA 485 61.08 c.87.1.8 105140 2pg9A 337 61.14 1yrrA 382 61.18 b.92.1.5,c.1.9.10 123935,123936 1v0lA 313 61.34 c.1.8.3 108207 1aj2A 282 62.27 c.1.21.1 29665 1ra0A 430 62.91 b.92.1.2,c.1.9.5 111756,111757 1o69A 394 63.21 c.67.1.4 92560 1ad1A 266 64.40 c.1.21.1 29668 1frb 315 65.22 2al1A 436 65.65 c.1.11.1,d.54.1.1 126949,126950 1kvkA 395 66.82 d.14.1.5,d.58.26.3 73060,73061 1je0A 236 67.41 c.56.2.1 66581 1j2rA 199 68.41 c.33.1.3 90788 3b40A 417 68.53 1jq5A 370 69.27 e.22.1.2 67084 1a0dA 440 70.45 c.1.15.3 29533 1j96A 323 71.13 c.1.7.1 71616 1iugA 352 71.85 c.67.1.3 90699 2gouA 365 73.54 1n7kA 234 73.70 c.1.10.1 85374 1iu8A 206 74.17 c.56.4.1 71436 2qvcA 313 74.32 1f6yA 262 74.48 c.1.21.2 29673 1bf6A 291 74.93 c.1.9.3 29065 2b78A 385 76.73 b.122.1.9,c.66.1.51 128025,128026 2hneA 436 77.92 2bkwA 385 78.07 c.67.1.3 128714 1j53A 186 78.33 c.55.3.5 77076 1m5wA 243 78.51 c.1.24.1 84836 1uekA 275 78.79 d.14.1.5,d.58.26.5 88483,88484 1yxyA 234 79.24 c.1.2.5 124203 2o55A 258 79.59 2oycA 306 80.01 3canA 182 80.50 1hdiA 413 81.07 c.86.1.1 60964 2h3hA 313 81.33 1k47A 337 81.94 d.14.1.5,d.58.26.4 72040,72041 1z08A 170 82.17 c.37.1.8 124303 1fc4A 401 82.75 c.67.1.4 59760 1r8sE 203 83.03 a.118.3.1 97248 2iuyA 342 83.75 2pq8A 278 83.86 1gkpA 458 83.89 b.92.1.3,c.1.9.6 70231,70232 1n82A 331 83.94 c.1.8.3 91703 1g3qA 237 84.30 c.37.1.10 60237 1gudA 288 84.38 c.93.1.1 83326 2hxpA 155 84.49 2j5vA 367 85.69 1uasA 362 86.07 b.71.1.1,c.1.8.1 88388,88389 2ekcA 262 86.59 1k7kA 221 86.71 c.51.4.1 72104 2q8xA 331 87.05 1wa3A 205 87.58 c.1.10.1 120802 1xviA 275 88.84 c.108.1.10 116088 1vzwA 244 88.99 c.1.2.1 120553 1ujnA 348 89.15 e.22.1.1 99460