# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 3.37e-15 2anuA 255 6.32e-15 c.6.3.1 127058 1m65A 245 2.26e-14 c.6.3.1 84847 2hnhA 910 4.48e-12 1v77A 212 3.16e-07 c.6.3.2 108402 2qahA 303 0.1377 1j6oA 268 1.312 c.1.9.12 77088 1vc4A 254 1.473 c.1.2.4 100557 2gzxA 265 1.692 2pg3A 232 2.298 2z00A 426 2.443 2f6kA 307 3.225 c.1.9.15 133047 2ffiA 288 3.578 c.1.9.15 133385 1qtwA 285 4.186 c.1.15.1 29392 2gokA 429 5.244 1kkhA 317 5.298 d.14.1.5,d.58.26.3 72645,72646 2icsA 379 5.817 b.92.1.8,c.1.9.14 137241,137242 1xwyA 264 6.227 c.1.9.12 122411 2vc7A 314 6.609 1yixA 265 7.763 c.1.9.12 123371 1o12A 376 8.746 b.92.1.5,c.1.9.10 80758,80759 1rk6A 496 9.368 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 2g3fA 421 9.599 2fb2A 340 9.95 2g0wA 296 10.63 c.1.15.4 134503 1o0yA 260 10.92 c.1.10.1 80756 2qw5A 335 11.73 1ybdA 239 12.43 c.73.1.3 122884 2q02A 272 12.75 1yw1A 442 13.15 c.1.16.4 124130 1h5yA 253 13.69 c.1.2.1 65638 1thfD 253 15.17 c.1.2.1 28535 2a1fA 247 15.39 c.73.1.3 125991 2dejA 350 15.84 1zzmA 259 15.89 c.1.9.12 125911 2cz9A 350 17.01 2egxA 269 17.71 1k77A 260 17.93 c.1.15.5 72096 2a0nA 265 18.43 c.1.2.1 125961 1e43A 483 19.13 b.71.1.1,c.1.8.1 59217,59218 2pgfA 371 19.61 1pyfA 312 20.01 c.1.7.1 95334 2bneA 241 20.77 c.73.1.3 128824 1i60A 278 20.97 c.1.15.4 71118 1gsjA 258 21.97 c.73.1.2 70397 2dh2A 424 22.27 2q09A 416 22.51 2gwnA 452 22.82 1lqaA 346 23.65 c.1.7.1 84674 2j6vA 301 25.19 2yrrA 353 25.38 2driA 271 25.60 c.93.1.1 35637 2akoA 251 25.94 c.73.1.3 126923 1xrtA 467 27.49 b.92.1.3,c.1.9.6 122258,122259 1ionA 243 28.41 c.37.1.10 62633 1vl2A 421 28.85 c.26.2.1,d.210.1.1 108708,108709 1w8sA 263 28.98 c.1.10.1 120744 2yx0A 342 29.45 1cb0A 283 29.94 c.56.2.1 33790 1qopA 268 30.48 c.1.2.4 28570 1tvlA 454 30.65 c.1.16.4 107366 1qgoA 264 32.17 c.92.1.2 35596 2puzA 419 32.61 2dri 271 33.17 2guiA 194 33.60 c.55.3.5 135737 2qpxA 376 35.72 1rhcA 330 37.44 c.1.16.3 97468 1ituA 369 38.06 c.1.9.7 71423 1muwA 386 38.11 c.1.15.3 79495 1r8sE 203 38.31 a.118.3.1 97248 1ht6A 405 38.51 b.71.1.1,c.1.8.1 83629,83630 1aj2A 282 38.88 c.1.21.1 29665 3c8nA 356 38.92 3c6qA 311 39.54 1ad1A 266 39.86 c.1.21.1 29668 1gkrA 458 41.27 b.92.1.3,c.1.9.6 70251,70252 1g5bA 221 41.36 d.159.1.3 60261 2o14A 375 41.54 2ioyA 283 42.37 1iugA 352 43.36 c.67.1.3 90699 1y56B 382 43.90 1a53 247 44.03 1fobA 334 44.96 c.1.8.3 83255 2iswA 323 45.94 1tv8A 340 46.07 c.1.28.3 107352 2gagB 405 46.67 2gwgA 350 46.87 c.1.9.15 135805 1ur3M 319 47.00 c.1.7.1 99806 1rd5A 262 47.15 c.1.2.4 111772 1f6yA 262 47.64 c.1.21.2 29673 1iu8A 206 49.50 c.56.4.1 71436 1rzuA 485 49.60 c.87.1.8 105140 2ac7A 235 49.63 c.56.2.1 126543 2i5gA 325 49.90 1zosA 230 50.07 1o2dA 371 50.42 e.22.1.2 86591 1ynpA 317 50.73 1mpyA 307 51.05 d.32.1.3,d.32.1.3 38508,38509 3b9oA 440 51.46 2cygA 312 51.88 c.1.8.3 131025 3be7A 408 52.53 1yacA 208 52.82 c.33.1.3 31757 2ob3A 330 53.75 1a0cA 438 54.09 c.1.15.3 29529 1rvkA 382 54.19 c.1.11.2,d.54.1.1 97928,97929 1vyrA 364 54.26 c.1.4.1 108906 2hk0A 309 54.31 1n7kA 234 54.36 c.1.10.1 85374 1b8oA 284 54.54 c.56.2.1 33762 3b40A 417 54.78 1yrrA 382 55.32 b.92.1.5,c.1.9.10 123935,123936 2j5vA 367 55.97 1hdiA 413 56.03 c.86.1.1 60964 1a0dA 440 56.41 c.1.15.3 29533 1cl1A 395 57.39 c.67.1.3 34395 1xhcA 367 58.26 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2pa6A 427 58.56 1bli 483 59.34 3cnyA 301 59.38 1rrmA 386 59.76 e.22.1.2 105081 1jysA 242 61.37 c.56.2.1 77216 1kvkA 395 63.09 d.14.1.5,d.58.26.3 73060,73061 2va1A 256 63.61 2al1A 436 64.54 c.1.11.1,d.54.1.1 126949,126950 1v0lA 313 64.63 c.1.8.3 108207 1j2rA 199 66.55 c.33.1.3 90788 1vzwA 244 67.85 c.1.2.1 120553 1jq5A 370 68.79 e.22.1.2 67084 1yxyA 234 69.97 c.1.2.5 124203 1g67A 225 70.08 c.1.3.1 60311 1y0eA 223 70.98 c.1.2.5 116297 1j96A 323 72.17 c.1.7.1 71616 1j53A 186 72.66 c.55.3.5 77076 1j31A 262 72.68 d.160.1.2 90808 2pkfA 334 73.61 1gz0A 253 74.17 c.116.1.1,d.79.3.3 76391,76392 1frb 315 74.49 1kkoA 413 74.67 c.1.11.2,d.54.1.1 68675,68676 2amxA 376 75.21 c.1.9.1 127024 1kczA 413 75.25 c.1.11.2,d.54.1.1 68451,68452 1vljA 407 75.51 e.22.1.2 108832 1gkpA 458 75.94 b.92.1.3,c.1.9.6 70231,70232 2ze0A 555 76.24 2ip2A 334 76.24 2nlyA 245 76.72 c.6.2.7 138364 1ujnA 348 78.53 e.22.1.1 99460 1r8mE 203 79.59 a.118.3.1 97242 1yc5A 246 80.02 c.31.1.5 122910 1mxgA 435 80.24 b.71.1.1,c.1.8.1 85193,85194 2hx1A 284 81.20 1uasA 362 81.66 b.71.1.1,c.1.8.1 88388,88389 2qvcA 313 81.93 2oycA 306 82.12 1o69A 394 82.63 c.67.1.4 92560 1rvgA 305 83.26 c.1.10.2 97920 2hneA 436 83.57 1j54A 186 83.99 c.55.3.5 77077 2gb3A 409 84.20 c.67.1.1 134903 2ekcA 262 84.65 1odkA 235 84.83 c.56.2.1 86863 16pkA 415 85.15 c.86.1.1 35454 1ur4A 399 86.51 c.1.8.3 113402 2iuyA 342 86.74 1je0A 236 87.17 c.56.2.1 66581 2b78A 385 87.21 b.122.1.9,c.66.1.51 128025,128026 1ra0A 430 87.65 b.92.1.2,c.1.9.5 111756,111757 2o55A 258 88.13 2h3hA 313 88.75