# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.04e-14 2anuA 255 6.72e-14 c.6.3.1 127058 1m65A 245 1.40e-13 c.6.3.1 84847 2hnhA 910 3.00e-11 1v77A 212 2.20e-06 c.6.3.2 108402 2qahA 303 0.3278 2gzxA 265 1.212 1j6oA 268 1.519 c.1.9.12 77088 1xwyA 264 1.994 c.1.9.12 122411 2ffiA 288 2.212 c.1.9.15 133385 1o12A 376 2.390 b.92.1.5,c.1.9.10 80758,80759 2z00A 426 2.639 1yixA 265 2.748 c.1.9.12 123371 1vc4A 254 2.865 c.1.2.4 100557 1zzmA 259 3.063 c.1.9.12 125911 2icsA 379 5.207 b.92.1.8,c.1.9.14 137241,137242 2f6kA 307 5.666 c.1.9.15 133047 2fb2A 340 6.891 2pg3A 232 7.366 2gokA 429 7.891 1yrrA 382 9.581 b.92.1.5,c.1.9.10 123935,123936 1kkhA 317 9.852 d.14.1.5,d.58.26.3 72645,72646 2a1fA 247 10.46 c.73.1.3 125991 1ybdA 239 11.37 c.73.1.3 122884 1qtwA 285 11.45 c.1.15.1 29392 2g3fA 421 11.46 1vflA 356 11.49 c.1.9.1 120041 2vc7A 314 13.22 2pgfA 371 13.62 1b8oA 284 13.80 c.56.2.1 33762 1gkrA 458 15.93 b.92.1.3,c.1.9.6 70251,70252 2driA 271 17.39 c.93.1.1 35637 2bneA 241 17.44 c.73.1.3 128824 1yw1A 442 18.17 c.1.16.4 124130 1k77A 260 18.44 c.1.15.5 72096 2egxA 269 18.68 1rk6A 496 19.71 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1pyfA 312 19.81 c.1.7.1 95334 2q02A 272 20.35 2g0wA 296 21.27 c.1.15.4 134503 2gwgA 350 22.17 c.1.9.15 135805 2ob3A 330 22.95 1frb 315 23.09 1o0yA 260 23.23 c.1.10.1 80756 1xrtA 467 23.62 b.92.1.3,c.1.9.6 122258,122259 2i5gA 325 25.60 2j6vA 301 25.81 1mi3A 322 26.40 c.1.7.1 91274 1y56B 382 26.89 2dri 271 27.05 1tvlA 454 27.63 c.1.16.4 107366 1tv8A 340 28.23 c.1.28.3 107352 1a53 247 29.90 2va1A 256 29.92 1lqaA 346 31.08 c.1.7.1 84674 2ioyA 283 31.52 1zgdA 312 31.62 1w8sA 263 31.80 c.1.10.1 120744 1vl2A 421 32.48 c.26.2.1,d.210.1.1 108708,108709 2guiA 194 33.45 c.55.3.5 135737 2dh2A 424 33.92 1gsjA 258 34.08 c.73.1.2 70397 1vyrA 364 36.72 c.1.4.1 108906 2amxA 376 37.42 c.1.9.1 127024 1f6yA 262 37.87 c.1.21.2 29673 3c6qA 311 38.32 1fobA 334 38.86 c.1.8.3 83255 1i0dA 332 38.88 c.1.9.3 61487 1h5yA 253 41.36 c.1.2.1 65638 2gwnA 452 42.01 2hk0A 309 42.46 1ur4A 399 43.07 c.1.8.3 113402 1cb0A 283 43.40 c.56.2.1 33790 2puzA 419 43.46 2qt3A 403 43.69 1j54A 186 44.10 c.55.3.5 77077 2cz9A 350 44.42 1ur3M 319 44.58 c.1.7.1 99806 1j96A 323 44.89 c.1.7.1 71616 2c4nA 250 45.18 c.108.1.14 129837 2akoA 251 45.42 c.73.1.3 126923 2h3hA 313 45.86 2a0nA 265 45.94 c.1.2.1 125961 1e43A 483 46.15 b.71.1.1,c.1.8.1 59217,59218 1pswA 348 46.41 c.87.1.7 88287 1xviA 275 46.87 c.108.1.10 116088 2gouA 365 48.69 1kvkA 395 48.99 d.14.1.5,d.58.26.3 73060,73061 1i60A 278 50.62 c.1.15.4 71118 1us0A 316 51.44 c.1.7.1 99850 1mpyA 307 51.89 d.32.1.3,d.32.1.3 38508,38509 3bofA 566 52.17 2ip2A 334 53.64 1yxyA 234 54.34 c.1.2.5 124203 2i57A 438 54.41 1zuaX 317 54.60 1v0lA 313 55.59 c.1.8.3 108207 1gudA 288 56.88 c.93.1.1 83326 1bqcA 302 57.33 c.1.8.3 28831 2dejA 350 57.60 2qpxA 376 57.62 2h8zA 359 58.09 2iuyA 342 58.80 1gz0A 253 59.09 c.116.1.1,d.79.3.3 76391,76392 1j53A 186 59.20 c.55.3.5 77076 1jbwA 428 59.23 c.59.1.2,c.72.2.2 62860,62861 1gkpA 458 59.28 b.92.1.3,c.1.9.6 70231,70232 1ny1A 240 59.38 c.6.2.3 86395 1g67A 225 59.93 c.1.3.1 60311 1yc5A 246 60.07 c.31.1.5 122910 1ituA 369 60.33 c.1.9.7 71423 2pq8A 278 61.89 2nqlA 388 63.49 1p4cA 380 63.52 c.1.4.1 94100 1je0A 236 64.99 c.56.2.1 66581 3ciwA 348 65.57 1qopA 268 67.68 c.1.2.4 28570 2qw5A 335 68.45 2yrrA 353 68.60 2egzA 219 68.78 1ionA 243 68.82 c.37.1.10 62633 2iw0A 254 68.87 c.6.2.3 137737 2b81A 323 71.07 1hdiA 413 71.40 c.86.1.1 60964 2rbkA 261 71.54 3cnyA 301 72.19 2gt1A 326 72.31 1z41A 338 72.34 c.1.4.1 124421 1rd5A 262 72.43 c.1.2.4 111772 1yx1A 264 72.45 c.1.15.7 124169 2d59A 144 72.64 c.2.1.8 131266 1j2rA 199 73.86 c.33.1.3 90788 2p4zA 284 73.89 1ynpA 317 74.19 3b9oA 440 74.44 2o55A 258 74.57 1pz1A 333 74.57 c.1.7.1 95390 2fvyA 309 74.90 c.93.1.1 134227 2q8xA 331 75.04 2yx0A 342 75.30 1ad1A 266 77.46 c.1.21.1 29668 3c8nA 356 77.67 1thfD 253 78.32 c.1.2.1 28535 1bf6A 291 78.74 c.1.9.3 29065 2qvcA 313 79.63 1yacA 208 80.70 c.33.1.3 31757 1m3uA 264 80.88 c.1.12.8 84784 2pr7A 137 81.69 1hw6A 278 82.43 c.1.7.1 61296 1ra0A 430 82.55 b.92.1.2,c.1.9.5 111756,111757 2pa6A 427 83.17 1m5wA 243 84.63 c.1.24.1 84836 2vhlA 396 84.81 2o14A 375 85.24 1vzwA 244 85.28 c.1.2.1 120553 2hbvA 334 86.21 c.1.9.15 136320 2f46A 156 86.55 2al1A 436 86.77 c.1.11.1,d.54.1.1 126949,126950 1ht6A 405 86.84 b.71.1.1,c.1.8.1 83629,83630 2erxA 172 87.56 c.37.1.8 132304 2h0rA 216 88.01 1rvkA 382 88.29 c.1.11.2,d.54.1.1 97928,97929 2gagB 405 89.71 1nrwA 288 89.73 c.108.1.10 86128