# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.13e-17 2anuA 255 2.17e-17 c.6.3.1 127058 1m65A 245 1.13e-16 c.6.3.1 84847 2hnhA 910 2.44e-14 1v77A 212 7.11e-08 c.6.3.2 108402 2qahA 303 0.1288 2z00A 426 0.8870 2f6kA 307 1.109 c.1.9.15 133047 2gzxA 265 1.408 1o12A 376 1.784 b.92.1.5,c.1.9.10 80758,80759 2icsA 379 2.163 b.92.1.8,c.1.9.14 137241,137242 1j6oA 268 2.170 c.1.9.12 77088 1vc4A 254 2.465 c.1.2.4 100557 2ffiA 288 2.578 c.1.9.15 133385 1e43A 483 4.265 b.71.1.1,c.1.8.1 59217,59218 1kkhA 317 4.364 d.14.1.5,d.58.26.3 72645,72646 2pg3A 232 5.592 1xwyA 264 5.766 c.1.9.12 122411 1yrrA 382 6.346 b.92.1.5,c.1.9.10 123935,123936 2gokA 429 6.828 1o0yA 260 7.040 c.1.10.1 80756 1yixA 265 8.244 c.1.9.12 123371 2driA 271 8.349 c.93.1.1 35637 2guiA 194 9.292 c.55.3.5 135737 2g3fA 421 9.309 1zzmA 259 9.530 c.1.9.12 125911 1qtwA 285 10.49 c.1.15.1 29392 2qpxA 376 10.89 2dri 271 10.97 2fb2A 340 11.34 1jq5A 370 14.42 e.22.1.2 67084 1j53A 186 14.55 c.55.3.5 77076 2egxA 269 15.09 1j54A 186 17.62 c.55.3.5 77077 1gsjA 258 18.41 c.73.1.2 70397 1rk6A 496 18.44 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1yw1A 442 19.64 c.1.16.4 124130 2yx0A 342 20.11 1o2dA 371 21.61 e.22.1.2 86591 2gwnA 452 21.79 2gwgA 350 21.80 c.1.9.15 135805 2cz9A 350 21.96 1bli 483 22.41 1ht6A 405 22.82 b.71.1.1,c.1.8.1 83629,83630 2dejA 350 22.88 2dh2A 424 22.91 2i5gA 325 23.52 1b8oA 284 24.76 c.56.2.1 33762 2pgfA 371 24.95 1g5bA 221 25.84 d.159.1.3 60261 2pa6A 427 26.05 3cjpA 272 26.14 2vc7A 314 26.23 1ituA 369 30.92 c.1.9.7 71423 2puzA 419 31.31 2g0wA 296 31.35 c.1.15.4 134503 2a0nA 265 31.50 c.1.2.1 125961 3c9fA 557 31.55 1zosA 230 31.68 2pq8A 278 32.28 1thfD 253 33.92 c.1.2.1 28535 1p4cA 380 33.94 c.1.4.1 94100 2h3hA 313 34.99 1k77A 260 35.07 c.1.15.5 72096 1kvkA 395 35.43 d.14.1.5,d.58.26.3 73060,73061 1lqaA 346 37.14 c.1.7.1 84674 1twiA 434 37.32 b.49.2.3,c.1.6.1 107399,107400 2ioyA 283 37.56 2d5rA 252 37.88 1mpyA 307 38.05 d.32.1.3,d.32.1.3 38508,38509 2qw5A 335 38.43 3c6qA 311 39.26 1ykwA 435 41.07 c.1.14.1,d.58.9.1 123565,123566 1iu8A 206 41.41 c.56.4.1 71436 1rrmA 386 42.15 e.22.1.2 105081 1cb0A 283 42.29 c.56.2.1 33790 1tvlA 454 42.62 c.1.16.4 107366 1qopA 268 43.12 c.1.2.4 28570 1fobA 334 43.35 c.1.8.3 83255 1drw 273 43.83 1tv8A 340 44.01 c.1.28.3 107352 1smd 496 47.45 2j6vA 301 47.86 2p1jA 186 48.14 2o14A 375 48.32 2ze0A 555 48.89 2a1fA 247 49.93 c.73.1.3 125991 2f46A 156 51.35 1r8sE 203 51.65 a.118.3.1 97248 1gkrA 458 51.82 b.92.1.3,c.1.9.6 70251,70252 2r2nA 425 54.97 3brsA 289 55.20 1w8sA 263 56.59 c.1.10.1 120744 1ybdA 239 56.68 c.73.1.3 122884 1fxxA 482 56.80 c.55.3.5 33726 2qt3A 403 57.58 3b9oA 440 59.19 1v0lA 313 60.00 c.1.8.3 108207 2q09A 416 60.54 2cygA 312 62.85 c.1.8.3 131025 2r0cA 549 63.14 2qvcA 313 63.15 2ob3A 330 63.66 1aj2A 282 64.06 c.1.21.1 29665 1ra0A 430 64.66 b.92.1.2,c.1.9.5 111756,111757 3bc9A 599 64.69 1mxgA 435 64.70 b.71.1.1,c.1.8.1 85193,85194 1zjaA 557 65.51 1xhcA 367 65.97 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1uok 558 66.52 1f6yA 262 67.42 c.1.21.2 29673 1uokA 558 67.64 b.71.1.1,c.1.8.1 27801,28788 1fl2A 310 68.48 c.3.1.5,c.3.1.5 59869,59870 1gudA 288 68.57 c.93.1.1 83326 1j2rA 199 69.61 c.33.1.3 90788 1vyrA 364 69.76 c.1.4.1 108906 2q8xA 331 69.88 1h5yA 253 69.90 c.1.2.1 65638 1qnrA 344 71.90 c.1.8.3 28834 1ur4A 399 71.97 c.1.8.3 113402 1tjyA 316 71.98 c.93.1.1 107062 1n7kA 234 72.45 c.1.10.1 85374 1i60A 278 72.69 c.1.15.4 71118 1yt3A 375 72.84 a.60.8.3,a.60.8.3,c.55.3.5 123992,123993,123994 3bijA 285 73.85 1vjoA 393 73.86 c.67.1.3 100827 1xviA 275 74.27 c.108.1.10 116088 2gagB 405 75.00 2nuhA 118 76.68 1ionA 243 77.65 c.37.1.10 62633 2amxA 376 78.43 c.1.9.1 127024 1jx6A 342 78.76 c.93.1.1 67406 1ymqA 261 79.44 c.108.1.10 123707 2j5vA 367 80.44 1rhcA 330 80.69 c.1.16.3 97468 1edg 380 80.86 1yacA 208 81.29 c.33.1.3 31757 1vzwA 244 81.73 c.1.2.1 120553 1g94A 448 82.51 b.71.1.1,c.1.8.1 65169,65170 2al1A 436 82.62 c.1.11.1,d.54.1.1 126949,126950 1ujnA 348 84.93 e.22.1.1 99460 1jaeA 471 85.52 b.71.1.1,c.1.8.1 27773,28760 1g57A 217 87.95 d.115.1.2 60253 1k7kA 221 89.40 c.51.4.1 72104 1smdA 496 89.47 b.71.1.1,c.1.8.1 27768,28755