# List of top-scoring protein chains for T0407.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.89e-21 1m65A 245 4.85e-20 c.6.3.1 84847 2anuA 255 5.97e-18 c.6.3.1 127058 2hpiA 1220 3.28e-12 2hqaA 917 6.05e-12 2hnhA 910 6.97e-12 1z69A 327 0.07634 2p1jA 186 0.9437 2ehhA 294 1.386 2j6vA 301 1.632 1yd7A 395 2.936 2a4aA 281 4.640 c.1.10.1 126150 1ezwA 349 4.733 c.1.16.3 29558 1s8nA 205 7.690 c.23.1.1 105374 1eupA 403 8.649 a.104.1.1 18967 1jioA 403 8.689 a.104.1.1 66747 1z8oA 404 8.740 a.104.1.1 124722 2ohwA 133 9.721 2yyuA 246 11.68 1z8qA 404 12.01 2hpgA 327 12.09 2fa5A 162 13.32 3bujA 397 13.95 1f07A 321 17.18 c.1.16.3 59560 1jipA 403 17.48 a.104.1.1 66748 1z8pA 404 17.58 a.104.1.1 124723 2gzxA 265 17.90 2vc7A 314 18.35 2v3uA 265 18.52 2bgnE 363 20.79 c.1.9.1 128492 1vflA 356 21.16 c.1.9.1 120041 1qxlA 356 21.48 c.1.9.1 104644 1w1iE 357 21.78 c.1.9.1 109051 1m53A 570 22.34 b.71.1.1,c.1.8.1 84805,84806 2qw5A 335 22.47 1wm0X 292 23.32 a.123.1.1 109404 2qdxA 257 23.51 1jdfA 446 23.74 c.1.11.2,d.54.1.1 62897,62898 2q2iA 116 23.93 2infA 359 24.18 1fgkA 310 26.19 d.144.1.7 41693 3bhtB 262 27.66 3c4fA 302 28.20 2g9xB 262 28.96 a.74.1.1,a.74.1.1 134845,134846 1vkhA 273 29.31 c.69.1.32 108662 1ja1A 622 29.90 b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1ufvA 276 30.73 c.26.1.4 88487 1vr6A 350 31.01 c.1.10.4 120439 1v8fA 276 31.55 c.26.1.4 100503 2q2hA 131 32.04 1vinA 268 32.77 a.74.1.1,a.74.1.1 18354,18355 1ja0A 620 34.35 b.43.4.1,c.23.5.2,c.25.1.4 62798,62799,62800 2dzdA 461 34.39 1amoA 615 36.30 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 2e9fA 462 37.65 2hfpA 282 38.87 a.123.1.1 136388 2o55A 258 39.56 2ghaA 382 40.22 1j9zA 622 40.79 b.43.4.1,c.23.5.2,c.25.1.4 62792,62793,62794 1h1rB 258 41.34 a.74.1.1,a.74.1.1 76490,76491 2hwqA 271 41.39 1rdtD 284 42.13 a.123.1.1 111788 1prgA 270 42.18 a.123.1.1 19314 1zgyA 272 42.41 a.123.1.1 125064 2uueB 259 43.64 a.74.1.1,a.74.1.1 139973,139974 1te2A 226 44.85 c.108.1.6 106792 2cchB 260 45.19 a.74.1.1,a.74.1.1 130237,130238 2iw9B 260 45.79 a.74.1.1,a.74.1.1 137748,137749 1knuA 274 45.82 a.123.1.1 77457 1o4vA 183 45.91 c.23.8.1 86628 2q5sA 274 46.06 2o09A 189 46.22 1k74D 283 46.67 a.123.1.1 68252 1xmpA 170 47.81 c.23.8.1 115521 1nyxA 276 48.87 a.123.1.1 86431 2om9A 278 49.82 a.123.1.1 139142 1rzmA 338 50.27 c.1.10.4 105137 1zzmA 259 50.78 c.1.9.12 125911 1nkvA 256 50.81 c.66.1.21 80577 1h5yA 253 50.99 c.1.2.1 65638 3prgA 278 51.92 a.123.1.1 19318 2p4yA 277 52.11 2g7eA 211 52.34 1wyuA 438 53.23 c.67.1.7 121452 1vywB 265 53.79 a.74.1.1,a.74.1.1 108923,108924 1gngA 378 54.93 d.144.1.7 76239 2gaiA 633 55.40 1u4cA 349 55.71 b.69.4.2 107666 1j2rA 199 56.62 c.33.1.3 90788 1sl8A 191 57.41 a.39.1.5 112099 2ogjA 417 59.19 2oi2A 292 59.21 2i6eA 301 59.83 2vndA 231 59.95 2i3tA 341 59.98 b.69.4.2 137034 1ibfA 151 60.19 b.1.8.1 62158 1e9hB 261 60.26 a.74.1.1,a.74.1.1 64813,64814 1oalA 151 62.04 b.1.8.1 86739 1l8bA 190 62.29 d.86.1.1 73683 1bzoA 151 62.78 b.1.8.1 22292 1p8cA 145 64.25 a.152.1.2 94354 1j1bA 420 64.36 d.144.1.7 90758 1q41A 424 64.76 d.144.1.7 95774 1ibhA 151 65.18 b.1.8.1 62159 1r0eA 391 65.24 d.144.1.7 111663 1yfqA 342 65.37 b.69.4.2 116680 2dqwA 294 65.37 2i3sA 349 66.05 b.69.4.2 137031 1u2eA 289 66.85 1q5kA 414 66.94 d.144.1.7 104537 1yixA 265 67.77 c.1.9.12 123371 1xxxA 303 67.88 c.1.10.1 122433 2phcB 225 68.13 1bqgA 451 68.41 c.1.11.2,d.54.1.1 29217,38861 1ibdA 151 69.98 b.1.8.1 62157 2pgfA 371 71.53 1vp8A 201 72.07 c.49.1.2 113947 1pyxA 422 72.17 d.144.1.7 95383 2pz0A 252 74.29 2z0hA 197 74.33 1uv5A 350 74.43 d.144.1.7 100029 1oajA 151 74.51 b.1.8.1 86738 2nzhA 113 74.74 1w8rA 263 74.88 c.1.10.1 120734 1djuA 388 75.30 c.67.1.1 59116 1kpsB 171 75.97 a.118.12.1 68787 2hr7A 486 77.60 1gdeA 389 77.90 c.67.1.1 60456 2o5kA 372 79.16 2i4jA 286 80.46 a.123.1.1 137049 1w8sA 263 80.60 c.1.10.1 120744 2yxgA 289 80.96 1vpxA 230 82.43 c.1.10.1 113977 2pk0A 250 82.65 1nf8A 207 82.66 c.33.1.3 85630 1v77A 212 84.10 c.6.3.2 108402 1wp1A 474 84.18 f.5.1.1 114778 2ow3A 352 84.23 1zczA 464 84.47 c.24.1.3,c.97.1.4 124923,124924 1azcA 129 84.55 b.6.1.1 22899 1zcoA 262 85.76 1ojxA 263 88.99 c.1.10.1 93164