# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 1.14e-13 1m65A 245 1.83e-13 c.6.3.1 84847 2anuA 255 1.27e-10 c.6.3.1 127058 2hnhA 910 2.89e-09 2qahA 303 0.3161 2ffiA 288 0.5318 c.1.9.15 133385 2vhlA 396 1.469 2f6kA 307 1.608 c.1.9.15 133047 1bf6A 291 1.844 c.1.9.3 29065 2ob3A 330 2.000 2q02A 272 2.596 1v77A 212 2.852 c.6.3.2 108402 3c86A 328 3.734 1lwjA 441 4.401 b.71.1.1,c.1.8.1 74303,74304 1gkrA 458 4.423 b.92.1.3,c.1.9.6 70251,70252 2d2jA 329 4.601 c.1.9.3 131175 1k77A 260 4.844 c.1.15.5 72096 3xis 387 4.942 2qulA 290 5.111 3canA 182 5.634 1xwyA 264 7.817 c.1.9.12 122411 1xrtA 467 8.118 b.92.1.3,c.1.9.6 122258,122259 3cnyA 301 8.858 2hk0A 309 9.257 2gzxA 265 9.276 1yw1A 442 10.13 c.1.16.4 124130 1qopA 268 11.23 c.1.2.4 28570 1i0dA 332 11.44 c.1.9.3 61487 2gokA 429 11.87 1yixA 265 13.45 c.1.9.12 123371 1muwA 386 13.74 c.1.15.3 79495 1aj2A 282 14.12 c.1.21.1 29665 1vc4A 254 14.17 c.1.2.4 100557 2gwnA 452 14.19 3cjpA 272 14.62 1j54A 186 14.64 c.55.3.5 77077 1i60A 278 15.60 c.1.15.4 71118 2gt1A 326 17.01 1ad4A 266 17.09 c.1.21.1 29670 1w1iE 357 17.12 c.1.9.1 109051 2g0wA 296 17.43 c.1.15.4 134503 2qv5A 261 18.55 1vflA 356 19.63 c.1.9.1 120041 3ciwA 348 19.85 4xis 387 20.29 1hrkA 359 20.45 c.92.1.1 61228 2pgfA 371 21.10 1ojxA 263 21.46 c.1.10.1 93164 2amxA 376 21.84 c.1.9.1 127024 2r2nA 425 22.20 1ad1A 266 22.37 c.1.21.1 29668 1fkx 349 22.72 1a4mA 349 22.74 c.1.9.1 29014 1h1nA 305 22.74 c.1.8.3 70855 2vc7A 314 22.81 2fliA 220 23.10 c.1.2.2 133714 2nlyA 245 23.18 c.6.2.7 138364 1gvfA 286 23.87 c.1.10.2 70599 1eyeA 280 24.09 c.1.21.1 29672 1j2rA 199 24.97 c.33.1.3 90788 1jq5A 370 25.13 e.22.1.2 67084 1kcxA 518 25.27 b.92.1.3,c.1.9.6 90953,90954 3c8nA 356 26.94 1tx2A 297 27.28 c.1.21.1 107420 1j53A 186 28.28 c.55.3.5 77076 2rbkA 261 28.47 8abpA 306 29.20 c.93.1.1 35647 1lqaA 346 29.35 c.1.7.1 84674 1im5A 180 30.21 c.33.1.3 66211 2egzA 219 30.34 2nqlA 388 31.02 2f96A 224 31.04 c.55.3.5 133153 1a0dA 440 31.22 c.1.15.3 29533 1vkfA 188 31.46 c.1.29.1 108656 1tvlA 454 31.74 c.1.16.4 107366 2ac7A 235 34.09 c.56.2.1 126543 1wraA 308 34.24 d.157.1.8 121190 1tv8A 340 35.73 c.1.28.3 107352 1rrmA 386 36.54 e.22.1.2 105081 1w8sA 263 36.94 c.1.10.1 120744 1v0lA 313 37.44 c.1.8.3 108207 2p1jA 186 38.17 1hw6A 278 38.34 c.1.7.1 61296 1xviA 275 38.89 c.108.1.10 116088 2qw5A 335 39.86 1qtwA 285 39.89 c.1.15.1 29392 1h5yA 253 41.74 c.1.2.1 65638 1o0yA 260 42.23 c.1.10.1 80756 1rd5A 262 42.56 c.1.2.4 111772 3b5vA 248 43.87 1amy 403 43.87 1cb0A 283 43.91 c.56.2.1 33790 2a0nA 265 44.08 c.1.2.1 125961 1vljA 407 44.46 e.22.1.2 108832 3bofA 566 44.48 1f0xA 571 44.60 d.58.32.2,d.145.1.1 39483,41746 1nf9A 207 45.01 c.33.1.3 85631 1yxyA 234 45.16 c.1.2.5 124203 1yacA 208 46.79 c.33.1.3 31757 1n7kA 234 47.05 c.1.10.1 85374 1v5xA 203 47.78 c.1.2.4 100377 2dh2A 424 48.36 1nq6A 302 48.38 c.1.8.3 92046 2d59A 144 48.98 c.2.1.8 131266 2ovlA 371 49.93 2puzA 419 50.87 1f6yA 262 51.37 c.1.21.2 29673 2pz0A 252 51.78 1b5tA 275 52.32 c.1.23.1 29676 1aj2 282 53.50 1m5wA 243 54.53 c.1.24.1 84836 1zjaA 557 54.69 2h1vA 310 55.09 1tvnA 293 56.43 c.1.8.3 119360 1vr6A 350 56.68 c.1.10.4 120439 2j6vA 301 56.72 1uok 558 58.33 2bneA 241 58.48 c.73.1.3 128824 1tqjA 230 59.70 c.1.2.2 107228 1edg 380 63.84 1zgdA 312 64.81 1ujnA 348 65.08 e.22.1.1 99460 1eqcA 394 65.34 c.1.8.3 28811 2guiA 194 65.93 c.55.3.5 135737 1igs 248 66.32 1oltA 457 67.50 c.1.28.2 93334 1qh8B 519 67.96 c.92.2.3 35634 1o12A 376 68.10 b.92.1.5,c.1.9.10 80758,80759 1avaA 403 68.62 b.71.1.1,c.1.8.1 27797,28784 2eg6A 347 68.90 1kczA 413 69.07 c.1.11.2,d.54.1.1 68451,68452 2hx1A 284 69.18 1korA 400 69.59 c.26.2.1,d.210.1.1 72824,72825 3ch0A 272 70.29 3b9oA 440 71.60 1vzwA 244 71.60 c.1.2.1 120553 3cs3A 277 72.44 1yrrA 382 72.72 b.92.1.5,c.1.9.10 123935,123936 1rhcA 330 75.26 c.1.16.3 97468 2i7gA 376 75.37 1vjrA 271 75.45 c.108.1.14 100832 1yx1A 264 75.82 c.1.15.7 124169 2b34A 199 78.13 1dozA 309 78.20 c.92.1.1 35592 1a53A 247 78.64 c.1.2.4 28564 1jvsA 400 78.64 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 2a1fA 247 79.02 c.73.1.3 125991 2nw0A 189 80.22 3bblA 287 80.39 1y97A 238 81.31 c.55.3.5 122773 2a67A 167 82.47 2dqwA 294 82.60 1a0cA 438 82.93 c.1.15.3 29529 1zzmA 259 83.30 c.1.9.12 125911 1gkpA 458 83.58 b.92.1.3,c.1.9.6 70231,70232 2nuhA 118 84.06 1km3A 247 84.86 c.1.2.3 72739 1mxgA 435 85.11 b.71.1.1,c.1.8.1 85193,85194 2pq8A 278 85.72 1dv2A 452 85.79 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2hrcA 359 86.36 c.92.1.1 136687 1fy7A 278 87.04 d.108.1.1 40817 1v93A 296 87.63 c.1.23.1 100532 2pmqA 377 88.05 1nf8A 207 88.12 c.33.1.3 85630 1j6oA 268 88.69 c.1.9.12 77088 1vbuA 328 88.96 c.1.8.3 119963 1rpxA 230 89.78 c.1.2.2 28536 1ta3B 303 89.91 c.1.8.3 106732