# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 6.14e-16 1m65A 245 4.10e-15 c.6.3.1 84847 2anuA 255 8.61e-13 c.6.3.1 127058 2hnhA 910 1.75e-10 2qahA 303 0.4105 2ffiA 288 0.7026 c.1.9.15 133385 2ob3A 330 1.341 2q02A 272 1.713 2vhlA 396 1.745 2d2jA 329 1.972 c.1.9.3 131175 2gzxA 265 2.066 1v77A 212 2.105 c.6.3.2 108402 1bf6A 291 2.197 c.1.9.3 29065 1qopA 268 3.549 c.1.2.4 28570 2qulA 290 3.744 2f6kA 307 4.304 c.1.9.15 133047 3c86A 328 4.935 3canA 182 6.138 1yixA 265 6.896 c.1.9.12 123371 1h5yA 253 6.945 c.1.2.1 65638 1lwjA 441 7.283 b.71.1.1,c.1.8.1 74303,74304 2nlyA 245 8.342 c.6.2.7 138364 1gkrA 458 9.036 b.92.1.3,c.1.9.6 70251,70252 1o0yA 260 9.665 c.1.10.1 80756 1i0dA 332 10.08 c.1.9.3 61487 2gokA 429 10.71 2pgfA 371 10.87 1eqcA 394 11.55 c.1.8.3 28811 1j54A 186 12.01 c.55.3.5 77077 2g0wA 296 12.89 c.1.15.4 134503 2dh2A 424 14.18 3c8nA 356 14.86 3cnyA 301 15.37 1xwyA 264 15.73 c.1.9.12 122411 1yw1A 442 15.77 c.1.16.4 124130 1nq6A 302 15.77 c.1.8.3 92046 2gwnA 452 15.94 1v0lA 313 16.99 c.1.8.3 108207 1i60A 278 17.62 c.1.15.4 71118 1yxyA 234 17.95 c.1.2.5 124203 2ac7A 235 18.81 c.56.2.1 126543 1aj2A 282 18.82 c.1.21.1 29665 1jq5A 370 19.47 e.22.1.2 67084 1qtwA 285 19.72 c.1.15.1 29392 1j2rA 199 20.25 c.33.1.3 90788 2a0nA 265 20.71 c.1.2.1 125961 1a4mA 349 20.75 c.1.9.1 29014 1ta3B 303 20.80 c.1.8.3 106732 1im5A 180 20.97 c.33.1.3 66211 1yc5A 246 21.02 c.31.1.5 122910 2qv5A 261 21.16 1vc4A 254 21.31 c.1.2.4 100557 1uok 558 21.38 1a0dA 440 21.42 c.1.15.3 29533 1j53A 186 21.80 c.55.3.5 77076 1ojxA 263 22.12 c.1.10.1 93164 1vflA 356 23.44 c.1.9.1 120041 1yacA 208 24.03 c.33.1.3 31757 2f96A 224 25.28 c.55.3.5 133153 2vc7A 314 25.42 2amxA 376 25.70 c.1.9.1 127024 2ovlA 371 26.65 1w1iE 357 26.90 c.1.9.1 109051 2agkA 260 27.97 2gt1A 326 28.45 2qw5A 335 28.99 2dejA 350 30.05 3xis 387 30.86 1tv8A 340 31.40 c.1.28.3 107352 1i1wA 303 31.49 c.1.8.3 76732 2nqlA 388 31.89 1h1nA 305 32.34 c.1.8.3 70855 2rbkA 261 32.37 3ciwA 348 32.62 2puzA 419 33.41 1mxgA 435 34.15 b.71.1.1,c.1.8.1 85193,85194 1nf9A 207 34.77 c.33.1.3 85631 2bneA 241 36.31 c.73.1.3 128824 1xrtA 467 36.62 b.92.1.3,c.1.9.6 122258,122259 1zzmA 259 36.77 c.1.9.12 125911 1zjaA 557 37.69 2hx1A 284 38.17 1ujnA 348 38.75 e.22.1.1 99460 1rrmA 386 38.95 e.22.1.2 105081 1vkfA 188 39.72 c.1.29.1 108656 2nxfA 322 39.82 2yx0A 342 43.54 1y0eA 223 43.94 c.1.2.5 116297 4xis 387 44.52 2i7gA 376 44.61 1tvlA 454 46.21 c.1.16.4 107366 1amy 403 46.38 1ad4A 266 47.66 c.1.21.1 29670 1muwA 386 48.04 c.1.15.3 79495 1vh7A 265 48.11 c.1.2.1 100646 1tcvA 287 49.00 1fkx 349 49.41 1eyeA 280 49.63 c.1.21.1 29672 1avaA 403 50.79 b.71.1.1,c.1.8.1 27797,28784 1f6yA 262 51.11 c.1.21.2 29673 2guiA 194 51.30 c.55.3.5 135737 1ad1A 266 51.31 c.1.21.1 29668 1korA 400 52.03 c.26.2.1,d.210.1.1 72824,72825 1kcxA 518 52.25 b.92.1.3,c.1.9.6 90953,90954 2p1jA 186 52.49 2eg6A 347 53.05 1hw6A 278 53.53 c.1.7.1 61296 1j6oA 268 53.65 c.1.9.12 77088 2oz3A 404 53.87 1f0xA 571 54.10 d.58.32.2,d.145.1.1 39483,41746 1k77A 260 54.86 c.1.15.5 72096 1yeyA 444 55.39 c.1.11.2,d.54.1.1 116664,116665 1cb0A 283 55.64 c.56.2.1 33790 2nuhA 118 56.40 8abpA 306 56.49 c.93.1.1 35647 2hk0A 309 56.80 2egzA 219 56.93 1umdB 324 58.12 c.36.1.7,c.48.1.2 99600,99601 1km3A 247 59.49 c.1.2.3 72739 1f07A 321 60.45 c.1.16.3 59560 1s2oA 244 60.52 c.108.1.10 118846 2hxtA 441 60.75 2fliA 220 61.21 c.1.2.2 133714 1kkhA 317 61.94 d.14.1.5,d.58.26.3 72645,72646 2qt3A 403 62.33 1igs 248 62.65 2cz9A 350 63.61 1vljA 407 65.27 e.22.1.2 108832 1bli 483 67.64 2pmqA 377 67.70 1n7kA 234 68.86 c.1.10.1 85374 2ahdA 165 69.34 d.159.1.7 126752 1zcoA 262 69.95 3bofA 566 70.12 2d59A 144 70.20 c.2.1.8 131266 1gvfA 286 70.48 c.1.10.2 70599 1g5bA 221 71.37 d.159.1.3 60261 2nw0A 189 72.27 2tysA 268 72.53 c.1.2.4 28572 1ezwA 349 72.56 c.1.16.3 29558 1z41A 338 73.24 c.1.4.1 124421 1w8sA 263 74.14 c.1.10.1 120744 2akoA 251 74.46 c.73.1.3 126923 1dv2A 452 75.04 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1vzwA 244 75.21 c.1.2.1 120553 1aj2 282 75.24 1m5wA 243 75.88 c.1.24.1 84836 2egxA 269 77.28 1x9gA 200 78.02 c.33.1.3 109527 1ghsA 306 80.70 c.1.8.3 28840 2dorA 311 81.24 c.1.4.1 28593 1k4iA 233 81.28 d.115.1.2 72056 1vr6A 350 81.45 c.1.10.4 120439 1wraA 308 82.12 d.157.1.8 121190 1dorA 311 82.86 c.1.4.1 28595 1zjjA 263 83.54 2j4jA 226 83.58 1wd7A 261 84.11 c.113.1.1 114526 3b5vA 248 84.16 1l2uA 245 84.91 c.1.2.3 73516 1h4pA 408 85.60 c.1.8.3 90617 2ftwA 521 85.86 b.92.1.3,c.1.9.6 134083,134084 1ma3A 253 87.30 c.31.1.5 78883 1vd6A 224 89.94 c.1.18.3 119991