# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 5.42e-16 1m65A 245 2.55e-15 c.6.3.1 84847 2anuA 255 1.04e-12 c.6.3.1 127058 2hnhA 910 1.41e-10 2qahA 303 0.2609 2ffiA 288 0.4172 c.1.9.15 133385 2ob3A 330 1.140 2vhlA 396 1.452 2d2jA 329 1.580 c.1.9.3 131175 1bf6A 291 2.110 c.1.9.3 29065 2gzxA 265 2.309 2f6kA 307 2.464 c.1.9.15 133047 1v77A 212 2.667 c.6.3.2 108402 2q02A 272 3.142 1qopA 268 4.032 c.1.2.4 28570 2qulA 290 4.418 3c86A 328 4.774 2nlyA 245 5.880 c.6.2.7 138364 1yixA 265 6.099 c.1.9.12 123371 1j54A 186 7.015 c.55.3.5 77077 1h5yA 253 7.170 c.1.2.1 65638 1o0yA 260 8.317 c.1.10.1 80756 1gkrA 458 8.581 b.92.1.3,c.1.9.6 70251,70252 2gokA 429 8.655 1lwjA 441 9.169 b.71.1.1,c.1.8.1 74303,74304 3canA 182 9.337 3cnyA 301 9.704 1i0dA 332 10.23 c.1.9.3 61487 3c8nA 356 11.47 1j53A 186 11.82 c.55.3.5 77076 1yw1A 442 13.06 c.1.16.4 124130 1a0dA 440 13.51 c.1.15.3 29533 1nq6A 302 13.71 c.1.8.3 92046 1i60A 278 14.35 c.1.15.4 71118 2gwnA 452 14.86 1yc5A 246 15.59 c.31.1.5 122910 1aj2A 282 15.96 c.1.21.1 29665 1qtwA 285 16.40 c.1.15.1 29392 2pgfA 371 16.49 2g0wA 296 16.56 c.1.15.4 134503 2a0nA 265 16.84 c.1.2.1 125961 1v0lA 313 16.89 c.1.8.3 108207 1xwyA 264 17.34 c.1.9.12 122411 1uok 558 17.41 1eqcA 394 17.51 c.1.8.3 28811 1a4mA 349 17.94 c.1.9.1 29014 1jq5A 370 19.68 e.22.1.2 67084 1ojxA 263 20.32 c.1.10.1 93164 1j2rA 199 20.70 c.33.1.3 90788 1tv8A 340 20.89 c.1.28.3 107352 1im5A 180 20.92 c.33.1.3 66211 2nqlA 388 21.44 2f96A 224 21.87 c.55.3.5 133153 1vc4A 254 22.02 c.1.2.4 100557 2dh2A 424 22.57 2qv5A 261 22.77 1yxyA 234 22.83 c.1.2.5 124203 1ta3B 303 23.56 c.1.8.3 106732 2agkA 260 23.91 2ac7A 235 25.42 c.56.2.1 126543 2puzA 419 25.83 2vc7A 314 26.35 2gt1A 326 27.15 2guiA 194 27.81 c.55.3.5 135737 3xis 387 28.70 2amxA 376 28.99 c.1.9.1 127024 2hk0A 309 29.38 1zzmA 259 29.65 c.1.9.12 125911 1i1wA 303 30.89 c.1.8.3 76732 1w1iE 357 31.23 c.1.9.1 109051 1y0eA 223 31.77 c.1.2.5 116297 1ujnA 348 31.88 e.22.1.1 99460 1yacA 208 32.01 c.33.1.3 31757 1nf9A 207 32.04 c.33.1.3 85631 1vflA 356 32.28 c.1.9.1 120041 4xis 387 32.45 1xrtA 467 33.10 b.92.1.3,c.1.9.6 122258,122259 1muwA 386 33.12 c.1.15.3 79495 2rbkA 261 33.25 1vkfA 188 33.86 c.1.29.1 108656 2nxfA 322 34.04 1umdB 324 35.59 c.36.1.7,c.48.1.2 99600,99601 3ciwA 348 35.67 1amy 403 35.71 1h1nA 305 36.67 c.1.8.3 70855 2ovlA 371 37.12 2qw5A 335 37.25 1eyeA 280 37.49 c.1.21.1 29672 2hx1A 284 38.51 1gvfA 286 38.90 c.1.10.2 70599 2eg6A 347 39.94 1vr6A 350 40.16 c.1.10.4 120439 1mxgA 435 40.43 b.71.1.1,c.1.8.1 85193,85194 1j6oA 268 40.82 c.1.9.12 77088 2i7gA 376 41.13 1vzwA 244 41.95 c.1.2.1 120553 2p1jA 186 42.95 1rrmA 386 43.64 e.22.1.2 105081 1fkx 349 43.87 1k77A 260 44.27 c.1.15.5 72096 1zjaA 557 45.16 1f6yA 262 45.72 c.1.21.2 29673 2yx0A 342 45.88 1ad4A 266 45.92 c.1.21.1 29670 1tvlA 454 46.71 c.1.16.4 107366 1hw6A 278 46.94 c.1.7.1 61296 1avaA 403 47.96 b.71.1.1,c.1.8.1 27797,28784 3bofA 566 49.48 1g5bA 221 50.18 d.159.1.3 60261 1n7kA 234 50.90 c.1.10.1 85374 2dorA 311 51.69 c.1.4.1 28593 2bneA 241 51.93 c.73.1.3 128824 1x9gA 200 52.38 c.33.1.3 109527 1m5wA 243 52.38 c.1.24.1 84836 1igs 248 52.53 1ad1A 266 53.02 c.1.21.1 29668 2dejA 350 53.68 1w8sA 263 54.83 c.1.10.1 120744 1yeyA 444 55.19 c.1.11.2,d.54.1.1 116664,116665 1dorA 311 55.27 c.1.4.1 28595 1cb0A 283 55.49 c.56.2.1 33790 1y97A 238 55.99 c.55.3.5 122773 1f07A 321 56.01 c.1.16.3 59560 2fliA 220 56.21 c.1.2.2 133714 1bli 483 58.46 2ahdA 165 58.48 d.159.1.7 126752 2ftwA 521 58.64 b.92.1.3,c.1.9.6 134083,134084 1ma3A 253 59.31 c.31.1.5 78883 1s2oA 244 59.62 c.108.1.10 118846 8abpA 306 59.73 c.93.1.1 35647 2hxtA 441 59.81 2qt3A 403 60.04 1zcoA 262 60.34 1vh7A 265 61.64 c.1.2.1 100646 1ghsA 306 62.05 c.1.8.3 28840 1kcxA 518 62.20 b.92.1.3,c.1.9.6 90953,90954 1aj2 282 62.35 2pmqA 377 64.17 1wraA 308 64.53 d.157.1.8 121190 2egzA 219 65.90 1korA 400 66.79 c.26.2.1,d.210.1.1 72824,72825 1dv2A 452 67.22 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1jr2A 286 67.52 c.113.1.1 67111 2nuhA 118 67.66 1tcvA 287 67.87 2egxA 269 70.59 1rd5A 262 70.89 c.1.2.4 111772 3b5vA 248 70.94 2oa8A 233 71.74 1yx1A 264 72.81 c.1.15.7 124169 1vljA 407 74.62 e.22.1.2 108832 1v4vA 376 75.09 c.87.1.3 100313 1mucA 373 75.09 c.1.11.2,d.54.1.1 29236,38880 1frb 315 75.25 1ezwA 349 75.45 c.1.16.3 29558 2nw0A 189 75.65 1vd6A 224 76.30 c.1.18.3 119991 2tysA 268 77.09 c.1.2.4 28572 1km3A 247 78.84 c.1.2.3 72739 1f0xA 571 78.91 d.58.32.2,d.145.1.1 39483,41746 1rzmA 338 79.56 c.1.10.4 105137 2pajA 492 79.95 2oz3A 404 79.96 1tx2A 297 80.00 c.1.21.1 107420 1rhcA 330 84.48 c.1.16.3 97468 1thfD 253 85.47 c.1.2.1 28535 1qh8B 519 86.09 c.92.2.3 35634 1wcwA 261 87.48 2ekcA 262 87.78 1bqcA 302 88.27 c.1.8.3 28831 1gveA 327 88.58 c.1.7.1 70597 3ch0A 272 89.39 1vbuA 328 89.48 c.1.8.3 119963 2akoA 251 89.86 c.73.1.3 126923