# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 2.36e-12 1m65A 245 7.25e-12 c.6.3.1 84847 2anuA 255 1.72e-09 c.6.3.1 127058 2hnhA 910 1.79e-08 2gzxA 265 0.7392 2qahA 303 1.163 1xwyA 264 1.248 c.1.9.12 122411 1v77A 212 1.525 c.6.3.2 108402 2ob3A 330 1.809 1bf6A 291 2.140 c.1.9.3 29065 3c86A 328 2.443 3xis 387 2.684 2ffiA 288 2.710 c.1.9.15 133385 2qulA 290 3.934 1muwA 386 4.727 c.1.15.3 79495 2d2jA 329 4.802 c.1.9.3 131175 2vhlA 396 5.057 3cjpA 272 5.691 1yixA 265 6.649 c.1.9.12 123371 2gokA 429 7.290 4xis 387 7.513 1lwjA 441 7.516 b.71.1.1,c.1.8.1 74303,74304 2bv9A 290 7.919 c.1.8.3 129242 1zzmA 259 7.964 c.1.9.12 125911 2nlyA 245 8.625 c.6.2.7 138364 2q02A 272 8.772 1qopA 268 9.369 c.1.2.4 28570 2citA 282 9.98 c.1.8.3 130499 1v0lA 313 10.27 c.1.8.3 108207 1k77A 260 10.95 c.1.15.5 72096 2v3gA 283 11.11 1w1iE 357 11.66 c.1.9.1 109051 2gwnA 452 12.13 2qv5A 261 13.24 1eqcA 394 13.70 c.1.8.3 28811 2egzA 219 13.85 1nq6A 302 13.91 c.1.8.3 92046 2r2nA 425 14.20 1j2rA 199 14.45 c.33.1.3 90788 2vc7A 314 14.46 1h1nA 305 14.87 c.1.8.3 70855 1jq5A 370 16.69 e.22.1.2 67084 2qw5A 335 16.86 1a4mA 349 16.89 c.1.9.1 29014 1n82A 331 17.52 c.1.8.3 91703 1nf9A 207 18.34 c.33.1.3 85631 2csuA 457 19.78 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1ojxA 263 20.33 c.1.10.1 93164 2pgfA 371 20.96 1i1wA 303 21.06 c.1.8.3 76732 1vzwA 244 21.10 c.1.2.1 120553 1n7kA 234 21.26 c.1.10.1 85374 1yw1A 442 21.26 c.1.16.4 124130 1i60A 278 21.44 c.1.15.4 71118 1j6oA 268 21.63 c.1.9.12 77088 1uok 558 21.71 1i0dA 332 22.21 c.1.9.3 61487 1bqcA 302 22.63 c.1.8.3 28831 1qtwA 285 22.66 c.1.15.1 29392 1h5yA 253 23.19 c.1.2.1 65638 1f6yA 262 24.82 c.1.21.2 29673 3c8nA 356 25.23 2b81A 323 26.03 1ad4A 266 26.42 c.1.21.1 29670 1vr6A 350 26.64 c.1.10.4 120439 1yxyA 234 26.69 c.1.2.5 124203 1jubA 311 26.91 c.1.4.1 90908 1zcoA 262 27.21 1a0dA 440 27.89 c.1.15.3 29533 2nw0A 189 28.06 1rzmA 338 28.93 c.1.10.4 105137 2zg5A 397 29.26 3bofA 566 29.75 1ny1A 240 29.76 c.6.2.3 86395 2yr1A 257 29.81 2amxA 376 30.01 c.1.9.1 127024 1gkrA 458 30.34 b.92.1.3,c.1.9.6 70251,70252 2i7gA 376 31.87 1eyeA 280 31.97 c.1.21.1 29672 1yc5A 246 32.49 c.31.1.5 122910 1j54A 186 32.80 c.55.3.5 77077 2a0nA 265 32.89 c.1.2.1 125961 1vbuA 328 33.22 c.1.8.3 119963 1ta3B 303 33.41 c.1.8.3 106732 1vc4A 254 33.83 c.1.2.4 100557 1hw6A 278 34.04 c.1.7.1 61296 2hx1A 284 34.76 3canA 182 34.77 2puzA 419 34.92 1xrtA 467 35.33 b.92.1.3,c.1.9.6 122258,122259 1f07A 321 35.46 c.1.16.3 59560 1tv8A 340 35.53 c.1.28.3 107352 2z2uA 311 35.68 1w8sA 263 36.55 c.1.10.1 120744 1dorA 311 36.63 c.1.4.1 28595 2yx0A 342 36.85 3b9oA 440 37.07 2dh2A 424 37.54 3cnyA 301 37.57 1ma3A 253 37.87 c.31.1.5 78883 2hk0A 309 38.39 8abpA 306 38.57 c.93.1.1 35647 1j79A 347 39.33 c.1.9.4 62675 1m5wA 243 39.37 c.1.24.1 84836 2eg6A 347 42.18 1zjaA 557 43.45 2nqlA 388 43.57 1a53A 247 45.01 c.1.2.4 28564 1ho1A 242 47.04 c.1.24.1 61097 2yxbA 161 48.40 1nf8A 207 48.89 c.33.1.3 85630 1gkpA 458 50.69 b.92.1.3,c.1.9.6 70231,70232 1q7zA 566 52.58 c.1.21.2,c.1.26.1 96090,96091 2dtvA 397 53.66 2ftwA 521 53.74 b.92.1.3,c.1.9.6 134083,134084 1v93A 296 54.44 c.1.23.1 100532 2qcvA 332 54.50 1o0yA 260 54.62 c.1.10.1 80756 1rrmA 386 55.86 e.22.1.2 105081 2ho4A 259 56.15 1vljA 407 56.19 e.22.1.2 108832 1vkfA 188 56.47 c.1.29.1 108656 1mxgA 435 57.71 b.71.1.1,c.1.8.1 85193,85194 2dztA 248 57.88 1ceo 343 58.60 3b5vA 248 58.81 1nbaA 264 59.37 c.33.1.3 31753 2nxfA 322 59.74 1igs 248 60.24 1rd5A 262 61.09 c.1.2.4 111772 3ch0A 272 61.17 2bp1A 360 61.41 2ekcA 262 62.40 1lucB 324 63.23 c.1.16.1 29548 1j53A 186 63.24 c.55.3.5 77076 1o12A 376 63.37 b.92.1.5,c.1.9.10 80758,80759 1ad1A 266 64.01 c.1.21.1 29668 2a67A 167 64.13 2e7fA 262 64.36 1aj2A 282 64.39 c.1.21.1 29665 2nuhA 118 64.88 1y0eA 223 66.57 c.1.2.5 116297 3ciwA 348 66.67 2p0oA 372 66.77 1x9gA 200 68.26 c.33.1.3 109527 1yacA 208 68.51 c.33.1.3 31757 1rvkA 382 69.08 c.1.11.2,d.54.1.1 97928,97929 1tvnA 293 69.35 c.1.8.3 119360 1wr2A 238 70.18 1w6tA 444 70.45 c.1.11.1,d.54.1.1 120670,120671 2oktA 342 71.26 1gvfA 286 71.43 c.1.10.2 70599 4enl 436 72.62 2phpA 192 72.99 1vh7A 265 73.33 c.1.2.1 100646 2ovlA 371 73.67 3boxA 415 74.12 2g0wA 296 74.80 c.1.15.4 134503 2bneA 241 75.44 c.73.1.3 128824 1erzA 303 75.70 d.160.1.2 59498 1edg 380 75.83 2fb2A 340 76.34 2dorA 311 76.70 c.1.4.1 28593 1rhcA 330 76.77 c.1.16.3 97468 2agkA 260 77.30 2j6vA 301 77.58 2q8xA 331 78.21 1ur1A 378 79.21 c.1.8.3 99804 1m2kA 249 80.50 c.31.1.5 84754 1nqkA 381 82.27 c.1.16.4 92050 1a53 247 84.86 1fkx 349 85.09 1uozA 315 85.75 c.6.1.1 113354 2oo3A 283 86.34 1h1yA 228 87.09 c.1.2.2 76506 2ew1A 201 87.48 c.37.1.8 132446 1xyzA 347 87.85 c.1.8.3 28804 1vs1A 276 87.99 7taa 478 88.27 2qt3A 403 88.56 2bnjA 303 88.72 c.1.8.3 128832 1kkoA 413 89.20 c.1.11.2,d.54.1.1 68675,68676