# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 2.14e-17 1m65A 245 5.56e-17 c.6.3.1 84847 2anuA 255 4.21e-14 c.6.3.1 127058 2hnhA 910 1.94e-11 2qahA 303 0.2225 2ffiA 288 0.8480 c.1.9.15 133385 1bf6A 291 0.9321 c.1.9.3 29065 2vhlA 396 1.066 2f6kA 307 1.216 c.1.9.15 133047 2ob3A 330 1.291 2gzxA 265 2.326 2d2jA 329 2.658 c.1.9.3 131175 1gkrA 458 3.062 b.92.1.3,c.1.9.6 70251,70252 1j54A 186 3.091 c.55.3.5 77077 3c86A 328 4.559 2q02A 272 5.348 1v77A 212 5.437 c.6.3.2 108402 1j53A 186 5.685 c.55.3.5 77076 1jq5A 370 6.030 e.22.1.2 67084 1yw1A 442 6.416 c.1.16.4 124130 2f96A 224 7.735 c.55.3.5 133153 1lwjA 441 8.168 b.71.1.1,c.1.8.1 74303,74304 2nlyA 245 8.292 c.6.2.7 138364 2nqlA 388 8.625 2gokA 429 8.941 1qopA 268 9.236 c.1.2.4 28570 2gt1A 326 10.28 3canA 182 10.55 2gwnA 452 10.89 1yixA 265 11.55 c.1.9.12 123371 2qulA 290 11.73 2pgfA 371 12.09 1k77A 260 12.48 c.1.15.5 72096 1xwyA 264 13.14 c.1.9.12 122411 1i0dA 332 14.36 c.1.9.3 61487 2guiA 194 14.51 c.55.3.5 135737 1rrmA 386 16.13 e.22.1.2 105081 1h5yA 253 16.66 c.1.2.1 65638 3xis 387 16.78 1tv8A 340 16.96 c.1.28.3 107352 1o0yA 260 17.36 c.1.10.1 80756 2qv5A 261 17.49 2p1jA 186 18.70 1uok 558 18.88 3cjpA 272 18.89 3cnyA 301 20.24 1ojxA 263 20.74 c.1.10.1 93164 1xrtA 467 21.79 b.92.1.3,c.1.9.6 122258,122259 2a0nA 265 21.80 c.1.2.1 125961 3c8nA 356 21.98 1yacA 208 22.71 c.33.1.3 31757 1yxyA 234 23.06 c.1.2.5 124203 2r2nA 425 23.61 2puzA 419 24.90 1ad4A 266 25.75 c.1.21.1 29670 1y97A 238 25.97 c.55.3.5 122773 1tcvA 287 26.13 1a4mA 349 27.33 c.1.9.1 29014 1tx2A 297 27.34 c.1.21.1 107420 2rbkA 261 27.66 1vc4A 254 27.74 c.1.2.4 100557 1muwA 386 28.42 c.1.15.3 79495 1i60A 278 29.86 c.1.15.4 71118 1aj2A 282 30.12 c.1.21.1 29665 2pz0A 252 30.25 1ad1A 266 30.45 c.1.21.1 29668 1vr6A 350 30.50 c.1.10.4 120439 1nf9A 207 31.16 c.33.1.3 85631 1mxgA 435 32.11 b.71.1.1,c.1.8.1 85193,85194 1f0xA 571 32.42 d.58.32.2,d.145.1.1 39483,41746 1w1iE 357 32.47 c.1.9.1 109051 1im5A 180 33.00 c.33.1.3 66211 1f6yA 262 33.02 c.1.21.2 29673 1amy 403 34.37 3bofA 566 34.80 1korA 400 35.58 c.26.2.1,d.210.1.1 72824,72825 1tvlA 454 35.96 c.1.16.4 107366 1ta3B 303 36.04 c.1.8.3 106732 1ujnA 348 36.83 e.22.1.1 99460 2givA 295 36.91 d.108.1.1 135253 2pq8A 278 37.00 1avaA 403 37.04 b.71.1.1,c.1.8.1 27797,28784 2i7gA 376 37.53 1a0dA 440 38.39 c.1.15.3 29533 1hrkA 359 38.48 c.92.1.1 61228 4xis 387 38.70 1vkfA 188 38.98 c.1.29.1 108656 3ciwA 348 39.29 1vflA 356 39.87 c.1.9.1 120041 1v0lA 313 39.97 c.1.8.3 108207 2fb2A 340 40.42 1eyeA 280 41.02 c.1.21.1 29672 2g0wA 296 41.45 c.1.15.4 134503 1cb0A 283 41.59 c.56.2.1 33790 2dh2A 424 42.21 1zzmA 259 42.56 c.1.9.12 125911 2oa8A 233 43.65 2nuhA 118 44.59 1zjaA 557 44.82 1wraA 308 45.00 d.157.1.8 121190 1h1nA 305 45.03 c.1.8.3 70855 2amxA 376 45.96 c.1.9.1 127024 1qtwA 285 46.47 c.1.15.1 29392 2dejA 350 46.68 1dorA 311 48.92 c.1.4.1 28595 2eg6A 347 49.34 1kcxA 518 50.24 b.92.1.3,c.1.9.6 90953,90954 2ac7A 235 51.12 c.56.2.1 126543 2hk0A 309 52.31 2agkA 260 52.93 1kczA 413 53.58 c.1.11.2,d.54.1.1 68451,68452 1ghsA 306 54.26 c.1.8.3 28840 2yx0A 342 55.23 1j2rA 199 55.49 c.33.1.3 90788 1y0eA 223 55.51 c.1.2.5 116297 2f7vA 369 56.11 1kkhA 317 56.21 d.14.1.5,d.58.26.3 72645,72646 1eqcA 394 56.57 c.1.8.3 28811 1nq6A 302 58.67 c.1.8.3 92046 1vljA 407 60.11 e.22.1.2 108832 3ch0A 272 62.02 1x9gA 200 62.59 c.33.1.3 109527 1lucB 324 63.06 c.1.16.1 29548 1rzmA 338 63.16 c.1.10.4 105137 1vh7A 265 64.66 c.1.2.1 100646 1w8sA 263 64.97 c.1.10.1 120744 3b5vA 248 65.16 2qw5A 335 65.24 2nw0A 189 65.37 8abpA 306 65.48 c.93.1.1 35647 2ovlA 371 66.50 1n7kA 234 68.12 c.1.10.1 85374 2h9aB 310 68.93 2b34A 199 69.13 1nf8A 207 69.99 c.33.1.3 85630 2egzA 219 70.01 1q1rA 431 70.19 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1vbuA 328 70.21 c.1.8.3 119963 1hw6A 278 70.78 c.1.7.1 61296 1fy7A 278 71.44 d.108.1.1 40817 3b9oA 440 73.34 1kkoA 413 75.16 c.1.11.2,d.54.1.1 68675,68676 1i1wA 303 75.23 c.1.8.3 76732 2bneA 241 75.46 c.73.1.3 128824 1miwA 404 75.84 a.173.1.1,d.218.1.4 79162,79163 1m5wA 243 76.92 c.1.24.1 84836 2vesA 299 78.12 1rd5A 262 78.37 c.1.2.4 111772 2oz3A 404 80.09 2hrcA 359 80.93 c.92.1.1 136687 1qh8B 519 81.20 c.92.2.3 35634 1ezwA 349 81.94 c.1.16.3 29558 2ohwA 133 81.98 2bv9A 290 82.16 c.1.8.3 129242 1kq3A 376 82.63 e.22.1.2 68790 1bli 483 82.89 1w6tA 444 83.12 c.1.11.1,d.54.1.1 120670,120671 1jdcA 429 84.47 b.71.1.1,c.1.8.1 27789,28776 1yc5A 246 85.13 c.31.1.5 122910 2iuyA 342 85.52 2b81A 323 85.73 1oltA 457 85.86 c.1.28.2 93334 1sbzA 197 86.59 c.34.1.1 112068 1xviA 275 88.66 c.108.1.10 116088 2g3fA 421 88.78 1dv2A 452 88.78 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2fliA 220 88.84 c.1.2.2 133714