# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2yxoA 267 0.000133 1m65A 245 0.000319 c.6.3.1 84847 2anuA 255 0.006527 c.6.3.1 127058 2hnhA 910 0.05519 1xrtA 467 4.171 b.92.1.3,c.1.9.6 122258,122259 2bneA 241 5.539 c.73.1.3 128824 1lwjA 441 5.710 b.71.1.1,c.1.8.1 74303,74304 1x1nA 524 6.021 c.1.8.1 121593 3cjpA 272 7.258 1zcoA 262 7.554 1vemA 516 7.638 b.3.1.1,c.1.8.1 120021,120022 1eswA 500 8.132 c.1.8.1 59500 2a1fA 247 8.397 c.73.1.3 125991 2h0rA 216 8.495 2vc7A 314 8.678 1ua7A 422 9.361 b.71.1.1,c.1.8.1 107759,107760 1zjaA 557 9.476 2p0oA 372 9.491 3c86A 328 9.593 2va1A 256 9.96 1wzlA 585 10.43 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1bf6A 291 10.54 c.1.9.3 29065 1ybdA 239 10.97 c.73.1.3 122884 1o12A 376 11.00 b.92.1.5,c.1.9.10 80758,80759 2ob3A 330 11.22 1vjzA 341 11.22 c.1.8.3 100838 1w1iE 357 11.31 c.1.9.1 109051 3xis 387 11.67 2q02A 272 11.74 1uok 558 12.97 1a4mA 349 13.94 c.1.9.1 29014 1n82A 331 14.02 c.1.8.3 91703 1nvmA 345 14.57 a.5.7.1,c.1.10.5 86249,86250 1tz7A 505 14.64 c.1.8.1 119394 1mxgA 435 14.82 b.71.1.1,c.1.8.1 85193,85194 1h3gA 601 14.94 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1uuqA 440 15.49 c.1.8.3 100015 2amxA 376 16.44 c.1.9.1 127024 1erzA 303 16.96 d.160.1.2 59498 2qulA 290 17.41 1yacA 208 18.20 c.33.1.3 31757 2guyA 478 18.30 b.71.1.1,c.1.8.1 135754,135755 2bs9A 503 18.40 b.71.1.2,c.1.8.3 129062,129063 1xwyA 264 18.54 c.1.9.12 122411 1uf5A 303 20.78 d.160.1.2 107808 3be7A 408 21.06 1vyrA 364 21.75 c.1.4.1 108906 2d2jA 329 21.89 c.1.9.3 131175 2dh2A 424 23.10 2h8zA 359 23.86 1e43A 483 25.24 b.71.1.1,c.1.8.1 59217,59218 1v77A 212 25.35 c.6.3.2 108402 1itcA 516 25.78 b.3.1.1,c.1.8.1 83705,83706 1yxyA 234 26.73 c.1.2.5 124203 1vypX 364 27.00 c.1.4.1 108905 1yhtA 367 27.27 c.1.8.6 123213 1uokA 558 27.55 b.71.1.1,c.1.8.1 27801,28788 2abbA 364 27.84 c.1.4.1 126517 1vliA 385 28.46 b.85.1.1,c.1.10.6 108830,108831 2nxfA 322 29.25 2hk0A 309 29.31 2q8xA 331 29.74 1r85A 379 30.27 c.1.8.3 104839 2bfgA 503 30.73 b.71.1.2,c.1.8.3 128423,128424 1ur4A 399 31.08 c.1.8.3 113402 1i0dA 332 31.17 c.1.9.3 61487 1j31A 262 31.22 d.160.1.2 90808 2qs8A 418 31.69 1vr6A 350 32.76 c.1.10.4 120439 2p3eA 420 32.79 1ht6A 405 33.10 b.71.1.1,c.1.8.1 83629,83630 4xis 387 33.11 2ze0A 555 33.28 1pbgA 468 33.40 c.1.8.4 28946 1fkx 349 33.50 2i5gA 325 33.68 1g2oA 268 33.91 c.56.2.1 60228 1r7aA 504 34.41 b.71.1.1,c.1.8.1 97192,97193 1wraA 308 34.45 d.157.1.8 121190 1nbaA 264 34.58 c.33.1.3 31753 1nq6A 302 34.62 c.1.8.3 92046 1amy 403 36.15 1bli 483 36.34 2pgfA 371 36.49 1vs1A 276 36.93 1bag 425 37.25 1vflA 356 37.25 c.1.9.1 120041 2qahA 303 37.39 1muwA 386 37.54 c.1.15.3 79495 1jakA 512 37.60 c.1.8.6,d.92.2.1 66472,66473 7taa 478 37.74 1jndA 420 37.87 c.1.8.5,d.26.3.1 71757,71758 1yixA 265 38.08 c.1.9.12 123371 1n7kA 234 38.31 c.1.10.1 85374 2b69A 343 38.51 c.2.1.2 127974 1hdoA 206 38.75 c.2.1.2 60965 2bdqA 224 39.38 3c6cA 316 39.40 1ug6A 431 41.52 c.1.8.4 88490 1ceo 343 41.67 1yx1A 264 41.67 c.1.15.7 124169 2c5aA 379 42.65 c.2.1.2 129894 1v0lA 313 45.01 c.1.8.3 108207 2gouA 365 45.42 1d8wA 426 45.44 c.1.15.2 29394 2citA 282 45.91 c.1.8.3 130499 1xuuA 349 46.21 b.85.1.1,c.1.10.6 116067,116068 2cw6A 298 46.46 1nofA 383 46.81 b.71.1.2,c.1.8.3 92020,92021 1bg4A 302 48.73 c.1.8.3 28806 1avaA 403 49.44 b.71.1.1,c.1.8.1 27797,28784 2gokA 429 49.50 2gduA 504 49.76 b.71.1.1,c.1.8.1 135032,135033 1hdiA 413 50.11 c.86.1.1 60964 16pkA 415 50.54 c.86.1.1 35454 3clwA 507 51.07 3co4A 312 52.21 1rzmA 338 52.22 c.1.10.4 105137 1vbuA 328 52.44 c.1.8.3 119963 2zdrA 349 52.55 1ra0A 430 52.59 b.92.1.2,c.1.9.5 111756,111757 1d7oA 297 54.94 c.2.1.2 29907 1im5A 180 55.13 c.33.1.3 66211 1ceoA 343 55.77 c.1.8.3 28808 1wdyA 285 57.49 d.211.1.1 114541 1zhaA 267 57.67 1wdpA 495 57.69 c.1.8.1 120907 1h7wA 1025 58.02 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1enp 312 58.34 2c0hA 353 59.21 c.1.8.3 129594 1to3A 304 59.74 c.1.10.1 107161 2o55A 258 59.77 1pe1A 267 60.21 c.1.10.4 94591 2f8yA 223 61.13 1eqcA 394 61.90 c.1.8.3 28811 1lqaA 346 62.23 c.1.7.1 84674 1z41A 338 63.06 c.1.4.1 124421 1q7zA 566 63.67 c.1.21.2,c.1.26.1 96090,96091 1g8mA 593 64.97 c.24.1.3,c.97.1.4 60371,60372 1byb 495 65.12 2qw5A 335 65.76 1j0hA 588 67.67 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1qo2A 241 68.00 c.1.2.1 28533 16pk 415 69.69 1vkfA 188 69.76 c.1.29.1 108656 1vzwA 244 70.03 c.1.2.1 120553 1w0mA 226 70.04 c.1.1.1 109027 1c93A 265 71.34 c.1.8.5 28998 2g0wA 296 72.74 c.1.15.4 134503 1wzaA 488 72.86 b.71.1.1,c.1.8.1 121489,121490 2d73A 738 74.05 2z26A 347 74.23 2dskA 311 74.68 1g94A 448 74.96 b.71.1.1,c.1.8.1 65169,65170 1zzmA 259 75.21 c.1.9.12 125911 2nwrA 267 76.31 1j2rA 199 76.49 c.33.1.3 90788 2b4yA 271 77.27 c.31.1.5 127868 1jdw 423 77.87 1gteA 1025 78.16 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2eg6A 347 78.38 1k77A 260 78.84 c.1.15.5 72096 1cb0A 283 79.57 c.56.2.1 33790 1qvbA 481 79.79 c.1.8.4 28983 1phpA 394 79.95 c.86.1.1 35452 2e9lA 469 79.96 1fpzA 212 80.18 c.45.1.1 59976 2ebnA 289 80.31 c.1.8.5 28990 1h1yA 228 82.35 c.1.2.2 76506 1ur1A 378 82.42 c.1.8.3 99804 1ho1A 242 83.03 c.1.24.1 61097 3cc1A 433 83.51 1xdwA 331 84.19 1lt8A 406 84.19 c.1.26.1 78186 2qcvA 332 84.93 1vkmA 297 85.63 c.138.1.1 108670 1s3iA 310 86.32 b.46.1.1,c.65.1.1 98435,98436 1xw8A 252 86.61 c.6.2.5 116111 1qycA 308 87.43 c.2.1.2 96581 2vhlA 396 88.04 1dxyA 333 88.82 c.2.1.4,c.23.12.1 30094,31354 3bc9A 599 89.20