# List of top-scoring protein chains for T0407.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2bsyA	278	20.17	b.85.4.1,b.85.4.1	129129,129130
2pvaA	345	21.77	d.153.1.3	41850
1dbrA	231	30.76	c.61.1.1	34041
1fsgA	233	30.84	c.61.1.1	34029
1eboA	131	40.16	h.3.2.1	45757
1qk5A	233	40.76	c.61.1.1	34035
1ftaA	337	48.01	e.7.1.1	42934
2fieA	338	48.10		
1fwxA	595	48.76	b.6.1.4,b.69.3.1	60069,60070
2f3bA	338	49.07	e.7.1.1	132861
1nuyA	337	50.05	e.7.1.1	86213
1yyzA	337	50.11		
1fj9A	337	50.28	e.7.1.1	42907
1levA	337	51.67	e.7.1.1	77911
2eboA	74	51.68	h.3.2.1	45754
1fsaA	337	54.53	e.7.1.1	42903
1frpA	335	54.95	e.7.1.1	42875
5fbpA	335	55.58	e.7.1.1	42873
1kz8A	337	55.67	e.7.1.1	77633
1rdzA	337	56.38	e.7.1.1	42882
1sb2B	129	60.84	d.169.1.1	118928
2fhyA	374	68.85		
1bk4A	337	69.48	e.7.1.1	42938
3pvaA	335	70.66	d.153.1.3	41854
2iwmA	338	84.87		
1ov9A	50	85.25	a.155.1.1	93591