# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1y0eA	223	2.246	c.1.2.5	116297
1pjjA	271	8.500	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
2co7B	221	15.53		
1fjgK	129	18.09	c.55.4.1	33733
2ifaA	208	18.14	d.90.1.1	137329
1p5vA	235	18.36	b.1.11.1,b.7.2.1	87812,87813
1eyzA	392	27.01	b.84.2.1,c.30.1.1,d.142.1.2	28246,31653,41498
1ez1A	392	35.34	b.84.2.1,c.30.1.1,d.142.1.2	28248,31655,41500
2yv5A	302	35.35		
1lla	628	37.11		
2himA	358	38.44		
1wyzA	242	38.80	c.90.1.1	121471
1jz8A	1023	38.89	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	67830,67831,67832,67833,67834
1brmA	367	41.45	c.2.1.3,d.81.1.1	30030,39945
2pbcA	102	44.71		
1t4bA	367	48.14	c.2.1.3,d.81.1.1	106406,106407
1ha1	184	49.30		
2uubK	129	49.82	c.55.4.1	139942
1k82A	268	50.92	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
1xbyA	216	53.44	c.1.2.3	121846
2nqrA	411	60.45	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492
3b8bA	292	63.23		
2qorA	204	64.48		
2vouA	397	66.11		
1z9lA	128	66.24		
2r00A	336	69.39		
1iirA	415	70.53	c.87.1.5	62453
1vh7A	265	74.62	c.1.2.1	100646
1dv2A	452	75.83	b.84.2.1,c.30.1.1,d.142.1.2	28238,31645,41490
1yukA	103	76.45		
1t9hA	307	78.82	b.40.4.5,c.37.1.8	112358,112359
1qumA	285	79.83	c.1.15.1	29393
1z8fA	228	82.63		
2pqiA	243	83.90		
1ys4A	354	84.32		
2hzfA	114	88.74