# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1y0eA	223	4.745	c.1.2.5	116297
1pjjA	271	8.979	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1p5vA	235	14.77	b.1.11.1,b.7.2.1	87812,87813
2ifaA	208	24.28	d.90.1.1	137329
1fjgK	129	25.18	c.55.4.1	33733
1lla	628	27.35		
2co7B	221	29.73		
1k82A	268	34.60	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2pbcA	102	34.96		
2yv5A	302	37.24		
1jz8A	1023	42.44	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	67830,67831,67832,67833,67834
1eyzA	392	44.40	b.84.2.1,c.30.1.1,d.142.1.2	28246,31653,41498
1ez1A	392	48.49	b.84.2.1,c.30.1.1,d.142.1.2	28248,31655,41500
2himA	358	49.39		
1n2eA	300	56.80	c.26.1.4	85268
1z9lA	128	61.20		
2nqdB	221	64.07		
1brmA	367	65.30	c.2.1.3,d.81.1.1	30030,39945
1dv2A	452	65.65	b.84.2.1,c.30.1.1,d.142.1.2	28238,31645,41490
2uubK	129	66.80	c.55.4.1	139942
2jmkA	111	67.28		
1ee8A	266	67.41	a.156.1.2,b.113.1.1,g.39.1.8	75823,75824,75825
1r9hA	135	72.78	d.26.1.1	97260
2r00A	336	78.93		
1llaA	628	80.20	a.85.1.1,a.86.1.1,b.1.18.3	18485,18496,21861
1t4bA	367	80.98	c.2.1.3,d.81.1.1	106406,106407
1k3xA	262	81.57	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1qumA	285	82.79	c.1.15.1	29393
1yq2A	1024	83.55	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	123843,123844,123845,123846,123847
2nqrA	411	83.70	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492
1ihoA	283	86.07	c.26.1.4	62390
2aneA	125	87.69	b.122.1.10	127046