# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1y0eA	223	6.394	c.1.2.5	116297
1thfD	253	18.00	c.1.2.1	28535
1pjjA	271	18.99	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
1wyzA	242	20.55	c.90.1.1	121471
1fjgK	129	20.61	c.55.4.1	33733
1jz8A	1023	24.26	b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3	67830,67831,67832,67833,67834
2ifaA	208	26.96	d.90.1.1	137329
1brmA	367	27.09	c.2.1.3,d.81.1.1	30030,39945
1t4bA	367	28.60	c.2.1.3,d.81.1.1	106406,106407
1ez1A	392	31.32	b.84.2.1,c.30.1.1,d.142.1.2	28248,31655,41500
1o58A	303	31.64	c.79.1.1	92491
1eyzA	392	40.27	b.84.2.1,c.30.1.1,d.142.1.2	28246,31653,41498
2himA	358	41.67		
2pbcA	102	41.99		
1qumA	285	43.60	c.1.15.1	29393
2r00A	336	43.88		
1vh7A	265	47.20	c.1.2.1	100646
2qorA	204	49.71		
1p5vA	235	50.03	b.1.11.1,b.7.2.1	87812,87813
1k82A	268	54.20	a.156.1.2,b.113.1.1,g.39.1.8	75866,75867,75868
2nqdB	221	55.30		
1r5jA	337	57.67	c.77.1.5	97097
2yv5A	302	58.94		
2uubK	129	64.87	c.55.4.1	139942
1plq	258	72.62		
2jmkA	111	76.46		
1z8fA	228	77.81		
2co7B	221	79.95		
2hjsA	340	81.35	c.2.1.3,d.81.1.1	136547,136548
1yukA	103	82.42		
2yu6A	141	84.50		
2nqrA	411	88.03	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492