# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jz8A 1023 0.4249 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1dp0A 1023 3.587 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22073,22074,23722,24346,28845 1bglA 1023 4.332 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 22097,22098,23734,24358,28857 1hq0A 295 4.934 d.194.1.1 61122 1amuA 563 7.657 e.23.1.1 43351 2hi2A 158 9.452 2nxvA 249 9.615 1lba 146 10.39 1iyoA 262 10.55 e.3.1.1 76970 3cmgA 667 10.93 1ep3A 311 11.28 c.1.4.1 28597 2yv5A 302 11.76 1oy3D 282 14.69 d.211.1.1 87554 1pamA 686 16.47 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21846,22515,27753,28740 1pjjA 271 18.20 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 1qumA 285 19.44 c.1.15.1 29393 1qniA 581 20.41 b.6.1.4,b.69.3.1 23042,27642 2i5gA 325 20.84 1miuA 738 21.10 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 79153,79154,79155,79156,79157 1g38A 393 21.55 c.66.1.27,d.287.1.1 111567,111568 1qqcA 773 22.29 c.55.3.5,e.8.1.1 33724,43013 1qo8A 566 22.32 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1onwA 390 23.39 b.92.1.7,c.1.9.13 87172,87173 3c3dA 311 23.44 2g2cA 167 23.48 c.57.1.1 134535 2pbcA 102 24.75 1ys4A 354 24.92 1xnzA 264 27.50 d.127.1.1 115673 1ll0A 339 27.80 c.68.1.14 73995 1eqnA 321 28.12 e.13.1.1 43256 2gdzA 267 30.77 c.2.1.2 135043 1plq 258 32.61 7ceiB 206 33.62 d.4.1.1 37134 1y08A 323 34.39 d.3.1.12 116280 1k3zD 282 34.40 d.211.1.1 77251 1dar 691 35.35 1sxjC 340 35.46 a.80.1.1,c.37.1.20 106085,106086 1wc3A 219 36.02 d.58.29.1 114495 1qwkA 317 36.14 c.1.7.1 96482 1k3xA 262 36.15 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1gvnB 287 36.84 c.37.1.21 76354 2q4aA 330 37.40 b.82.2.8 139839 2d1eA 248 37.48 2fafA 608 37.55 2dkhA 639 38.30 1clqA 903 38.44 c.55.3.5,e.8.1.1 33717,43006 2pgeA 377 39.10 1mtzA 293 39.79 c.69.1.7 79467 2v74B 346 40.47 1tljA 213 41.78 d.282.1.1 107126 1nf5B 286 42.55 c.68.1.2 80454 1u7bA 261 42.57 d.131.1.2,d.131.1.2 113083,113084 1bsgA 266 45.04 e.3.1.1 42729 2yu6A 141 45.53 1o58A 303 45.94 c.79.1.1 92491 1n0qA 93 48.70 k.37.1.1 79754 1lpjA 133 48.91 b.60.1.2 78123 2bexA 460 49.17 c.10.1.1 128398 1ftrA 296 49.58 d.58.33.1,d.58.33.1 39485,39486 1xfsA 178 49.62 d.129.3.5 109589 1m7vA 363 49.98 d.174.1.1 78748 1ve4A 206 50.81 c.94.1.1 120012 1namB 113 51.14 b.1.1.1 85489 1vzyA 291 53.03 d.193.1.1,g.81.1.1 114042,114043 1kjlA 146 53.38 b.29.1.3 118689 1gky 187 54.65 2jabA 136 56.05 3c9gA 142 56.22 2qwvA 208 57.52 1ex7A 186 58.15 c.37.1.1 59537 2jcbA 200 59.39 2rfmA 192 59.47 1y0eA 223 60.03 c.1.2.5 116297 1cxlA 686 60.15 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 2d4yA 463 60.37 2zfoC 147 60.77 2d8aA 348 62.12 1v0wA 506 62.72 d.136.1.2,d.136.1.2 108220,108221 1dssG 333 63.05 c.2.1.3,d.81.1.1 30022,39937 2eb4A 267 63.79 1z9lA 128 64.12 2ifaA 208 64.84 d.90.1.1 137329 2pnwA 380 65.15 2pusA 852 66.09 1oihA 301 68.11 b.82.2.5 93051 2z43A 324 69.98 1h2vZ 156 70.13 d.58.7.1 76595 1dyqA 234 70.58 b.40.2.2,d.15.6.1 59140,59141 1i7fA 292 71.28 d.193.1.1 61888 2f9lA 199 72.39 c.37.1.8 133166 1sflA 238 72.68 c.1.10.1 112077 2guyA 478 72.94 b.71.1.1,c.1.8.1 135754,135755 1ecrA 309 73.51 e.2.1.1 42678 1hzoA 271 73.66 e.3.1.1 71092 2frqA 225 74.21 d.3.1.1 133999 2ed6A 170 75.10 2zexA 147 75.15 2pggA 774 75.17 2ftwA 521 77.53 b.92.1.3,c.1.9.6 134083,134084 1zncA 266 78.63 b.74.1.1 27955 1qmeA 702 78.77 d.11.1.1,d.11.1.1,d.175.1.1,e.3.1.1 37487,37488,42560,42769 2qvwA 756 79.25 1m2tA 254 79.49 d.165.1.1 84761 1ualA 274 81.54 c.116.1.4 88383 1og6A 298 81.91 c.1.7.1 86984 2anpA 291 82.23 c.56.5.4 127056 1sddA 306 83.05 b.6.1.3,b.6.1.3 105431,105432 2p74A 263 84.70 2vgpA 284 85.38 1mnaA 298 87.13 c.69.1.22 79322 1uylA 236 88.15 d.122.1.1 108147 1cl8A 276 88.51 c.52.1.1 33230 1jeqB 565 88.53 b.131.1.2,c.62.1.4 90368,90369 2q3wA 111 89.15 b.33.1.1 139813 2himA 358 89.65