# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1y0eA	223	9.196	c.1.2.5	116297
1fjgK	129	15.86	c.55.4.1	33733
2ifaA	208	24.51	d.90.1.1	137329
1pjjA	271	27.44	a.156.1.2,b.113.1.1,g.39.1.8	104164,104165,104166
2pbcA	102	42.00		
1n2eA	300	48.34	c.26.1.4	85268
1p5vA	235	48.44	b.1.11.1,b.7.2.1	87812,87813
1o58A	303	51.00	c.79.1.1	92491
2iwkA	642	54.66		
2uubK	129	58.86	c.55.4.1	139942
1ez1A	392	68.08	b.84.2.1,c.30.1.1,d.142.1.2	28248,31655,41500
1brmA	367	71.42	c.2.1.3,d.81.1.1	30030,39945
2himA	358	71.54		
1ys4A	354	73.43		
1r9hA	135	75.00	d.26.1.1	97260
1y7lA	316	76.37	c.79.1.1	122695
1vh7A	265	77.55	c.1.2.1	100646
1eyzA	392	77.96	b.84.2.1,c.30.1.1,d.142.1.2	28246,31653,41498
1t4bA	367	78.15	c.2.1.3,d.81.1.1	106406,106407
2gdjA	264	79.90	c.37.1.11	135018
2r00A	336	84.95		
3b8bA	292	85.67		
1ihoA	283	88.73	c.26.1.4	62390