Best Alignments for T0407

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1vmeA	1.6881e+01	1vmeA/T0407-1vmeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.23.5.1 d.157.1.3
1sxjC	2.3434e+01	1sxjC/T0407-1sxjC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.80.1.1 c.37.1.20
1keqA	2.6182e+01	1keqA/T0407-1keqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.74.1.1
2ifaA	2.7547e+01	2ifaA/T0407-2ifaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.90.1.1
2pd1A	4.0901e+01	2pd1A/T0407-2pd1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2o6pA	4.2630e+01	2o6pA/T0407-2o6pA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vmiA	4.7613e+01	1vmiA/T0407-1vmiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.77.1.5
1w5tA	4.7714e+01	1w5tA/T0407-1w5tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.11 c.37.1.20
1uxzA	5.0457e+01	1uxzA/T0407-1uxzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.18.1.10
2hr2A	5.5097e+01	2hr2A/T0407-2hr2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1in4A	6.0788e+01	1in4A/T0407-1in4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.11 c.37.1.20
2cohA	6.3377e+01	2cohA/T0407-2cohA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.4 b.82.3.2
1nvmA	6.5116e+01	1nvmA/T0407-1nvmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.5.7.1 c.1.10.5
1mspA	7.0940e+01	1mspA/T0407-1mspA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.1.11.2
1gskA	7.2843e+01	1gskA/T0407-1gskA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.6.1.3 b.6.1.3 b.6.1.3
1fwxA	7.4983e+01	1fwxA/T0407-1fwxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.6.1.4 b.69.3.1
1n0qA	7.6584e+01	1n0qA/T0407-1n0qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	k.37.1.1
2nmxA	7.7362e+01	2nmxA/T0407-2nmxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.74.1.1
2iwkA	7.7962e+01	2iwkA/T0407-2iwkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1kpsB	7.8257e+01	1kpsB/T0407-1kpsB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.118.12.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001