# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vmeA	410	6.247	c.23.5.1,d.157.1.3	108893,108894
1sxjC	340	6.518	a.80.1.1,c.37.1.20	106085,106086
1w5tA	412	9.010	a.4.5.11,c.37.1.20	114255,114256
1nvmA	345	11.19	a.5.7.1,c.1.10.5	86249,86250
2ifaA	208	12.87	d.90.1.1	137329
1keqA	248	13.22	b.74.1.1	72387
2pd1A	104	17.52		
1wlyA	333	21.37		
1uxzA	131	24.43	b.18.1.10	100170
2hr2A	159	28.20		
2o6pA	161	29.09		
2cohA	202	30.20	a.4.5.4,b.82.3.2	130677,130678
1mspA	126	31.34	b.1.11.2	22333
1o1yA	239	34.86	c.23.16.1	86554
1l6wA	220	41.08	c.1.10.1	73632
1gskA	513	42.78	b.6.1.3,b.6.1.3,b.6.1.3	83314,83315,83316
2jbmA	299	44.12		
1ka9H	200	44.80	c.23.16.1	77308
2p91A	285	45.62		
2nmxA	260	45.86	b.74.1.1	138382
2chgA	226	45.94		
2hfxA	260	52.22		
2fwhA	134	52.99	c.47.1.1	134242
1ve4A	206	56.04	c.94.1.1	120012
1g67A	225	58.80	c.1.3.1	60311
1fwxA	595	59.53	b.6.1.4,b.69.3.1	60069,60070
1in4A	334	60.07	a.4.5.11,c.37.1.20	62597,62598
1dzoA	123	61.35	d.24.1.1	38378
1n0qA	93	62.47	k.37.1.1	79754
2zcwA	202	62.53		
2qs8A	418	65.12		
1xtyA	120	67.02		
1v7zA	260	69.40	c.125.1.1	100488
1lml	478	74.22		
2iwkA	642	80.61		
1vmiA	355	80.83	c.77.1.5	113678
2ozpA	345	81.35		
1rknA	110	83.65	b.40.1.1	111855
1o4uA	285	84.56	c.1.17.1,d.41.2.1	86624,86625
1fljA	260	87.00	b.74.1.1	27954
1hnrA	47	87.12	a.155.1.1	17896