# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3b47A 134 3.091 2qgqA 304 3.561 2zceA 291 4.192 1o63A 219 6.482 c.94.1.1 92540 1t0bA 252 6.831 c.23.16.6 106199 1tuhA 156 7.313 d.17.4.11 107345 2czvC 120 10.15 1je5A 206 10.66 b.40.4.7 62909 1kskA 234 11.34 d.66.1.5,d.265.1.3 72920,90389 3blzA 128 13.64 1el6A 219 14.24 d.182.1.1 42606 1accA 735 16.85 f.11.1.1 43828 2dfkA 402 17.42 1acc 735 17.56 1b9mA 265 20.31 a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1m1sA 116 24.23 b.1.11.2 84747 1u0kA 288 25.18 d.21.1.2,d.21.1.2 107547,107548 2cq2A 114 25.74 d.58.7.1 130713 2a84A 300 26.30 c.26.1.4 126389 2rjzA 147 28.55 2i5gA 325 28.65 1pbeA 394 29.28 c.3.1.2,d.16.1.2 30338,37869 1k9vF 201 29.47 c.23.16.1 68365 2nv0A 196 31.59 c.23.16.1 138625 3b40A 417 32.25 2av5A 120 32.58 2nqrA 411 33.65 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 1ycsB 239 33.75 d.211.1.1,b.34.2.1 19155,24553 1a62A 130 34.31 a.140.3.1,b.40.4.5 64708,64709 2aneA 125 35.29 b.122.1.10 127046 1i7kA 179 40.04 d.20.1.1 61889 1uouA 474 40.96 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 3cu3A 172 40.96 2q6fA 309 41.44 2omkA 231 43.15 1vqqA 646 45.97 d.17.4.5,d.175.1.1,e.3.1.1 114009,114010,114011 2ac0A 200 46.17 b.2.5.2 126539 2bngA 149 46.68 2bepA 159 50.00 d.20.1.1 128385 1ntvA 152 51.03 b.55.1.2 86168 1z6fA 363 51.16 b.105.1.1,e.3.1.1 124520,124521 2r39A 118 52.00 3b7cA 122 55.20 1shxA 138 56.70 b.6.1.5 118962 1rtuA 114 57.48 d.1.1.4 36139 1si6X 282 57.67 d.151.1.2 118968 1g5hA 454 57.89 c.51.1.1,d.104.1.1 60270,60271 1ihbA 162 59.28 d.211.1.1 19161 2ghpA 292 61.26 d.58.7.1,d.58.7.1,d.58.7.1 135184,135185,135186 1n2eA 300 62.03 c.26.1.4 85268 2qyxA 238 62.09 1q7sA 117 62.12 c.131.1.1 96055 1nx8A 273 62.66 b.82.2.8 86374 1bd8 156 62.73 1fjgL 135 64.94 b.40.4.5 25346 2ragA 417 65.12 1gy7A 125 66.95 d.17.4.2 70738 2bemA 170 67.52 b.1.18.2 116698 2pcxA 220 67.62 2j0fA 482 67.83 1bd8A 156 67.92 d.211.1.1 19157 1a62 130 68.53 2q0lA 311 68.96 1wn2A 121 69.16 2gk3A 256 69.28 2h2wA 312 71.91 2vqeL 135 72.29 1z8gA 372 73.63 b.47.1.2,d.170.1.2 124697,124698 2qcpX 80 74.81 2uubL 135 76.26 b.40.4.5 139943 1yh2A 175 79.36 d.20.1.1 123158 2b1xB 172 79.71 d.17.4.4 127677 2oafA 151 79.78 2oezA 247 83.36 2o5gA 148 83.95 1vioA 243 84.62 d.265.1.3,d.66.1.5 100762,100763 2prxA 160 85.19 1ituA 369 85.97 c.1.9.7 71423 1atiA 505 86.15 c.51.1.1,d.104.1.1 33196,40745 1mwpA 96 86.46 d.170.2.1 42453 1fwxA 595 87.78 b.6.1.4,b.69.3.1 60069,60070 2hzfA 114 88.70 2grrA 161 88.94 1vmbA 140 89.00 d.58.14.1 113672