# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ifaA	208	10.82	d.90.1.1	137329
1ihoA	283	12.57	c.26.1.4	62390
1yxyA	234	14.40	c.1.2.5	124203
2az4A	429	15.83	d.157.1.10	127597
1accA	735	16.95	f.11.1.1	43828
2pd1A	104	17.22		
3cm1A	139	17.45		
1mb4A	370	17.69	c.2.1.3,d.81.1.1	78908,78909
2iwkA	642	18.16		
1n2eA	300	20.25	c.26.1.4	85268
1eajA	126	25.65	b.1.1.1	59401
1nc7A	138	31.62	b.123.1.1	85549
2hr2A	159	34.67		
2ftsA	419	36.28	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
1gskA	513	37.69	b.6.1.3,b.6.1.3,b.6.1.3	83314,83315,83316
1kv7A	488	38.11	b.6.1.3,b.6.1.3,b.6.1.3	68873,68874,68875
2v82A	212	38.19		
2dbyA	368	39.64		
1ve4A	206	41.66	c.94.1.1	120012
1a5t	334	41.87		
2p65A	187	42.97		
2iiaA	131	43.35		
1n0qA	93	44.64	k.37.1.1	79754
1qwkA	317	46.44	c.1.7.1	96482
1igs	248	58.54		
1awcB	153	62.30	d.211.1.1	19156
2hfxA	260	63.80		
1acc	735	67.27		
1ka9H	200	69.80	c.23.16.1	77308
1fwxA	595	74.56	b.6.1.4,b.69.3.1	60069,60070
2yw3A	207	75.55		
1lla	628	76.79		
1hnrA	47	80.06	a.155.1.1	17896
1o1yA	239	80.78	c.23.16.1	86554
1j4aA	333	83.28	c.2.1.4,c.23.12.1	71502,71503
2omkA	231	84.89