# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pd1A	104	13.03		
1ihoA	283	13.99	c.26.1.4	62390
2ifaA	208	18.59	d.90.1.1	137329
1accA	735	19.89	f.11.1.1	43828
1n2eA	300	21.95	c.26.1.4	85268
1gskA	513	24.50	b.6.1.3,b.6.1.3,b.6.1.3	83314,83315,83316
2hr2A	159	25.81		
2iwkA	642	25.85		
2az4A	429	26.29	d.157.1.10	127597
1nc7A	138	28.08	b.123.1.1	85549
2hfxA	260	28.95		
1yxyA	234	30.23	c.1.2.5	124203
1mb4A	370	31.73	c.2.1.3,d.81.1.1	78908,78909
2iiaA	131	37.85		
1kv7A	488	37.92	b.6.1.3,b.6.1.3,b.6.1.3	68873,68874,68875
1n0qA	93	45.76	k.37.1.1	79754
1lla	628	49.55		
1fr7A	260	50.05	b.74.1.1	27828
2p65A	187	54.06		
2bhmA	164	54.53		
1awcB	153	55.63	d.211.1.1	19156
1eajA	126	58.03	b.1.1.1	59401
1qwkA	317	61.87	c.1.7.1	96482
1v8fA	276	62.75	c.26.1.4	100503
2nmxA	260	62.95	b.74.1.1	138382
2omkA	231	70.84		
1acc	735	76.12		
1r8eA	278	79.37	a.6.1.3,d.60.1.1	104843,104844
2dbyA	368	79.89		
2ao0A	324	80.68		
1yo1A	260	81.24		
2igqA	285	81.50		
1gjwA	637	83.48	b.71.1.1,c.1.8.1	60582,60583
2ftsA	419	86.76	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
1a5t	334	89.43