# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2az4A	429	6.129	d.157.1.10	127597
2ifaA	208	6.478	d.90.1.1	137329
1nc7A	138	11.63	b.123.1.1	85549
3cm1A	139	12.09		
2pd1A	104	16.08		
2iwkA	642	19.38		
2hr2A	159	22.70		
1eajA	126	23.08	b.1.1.1	59401
2igqA	285	24.72		
1mb4A	370	24.82	c.2.1.3,d.81.1.1	78908,78909
2dbyA	368	25.38		
1bvyF	191	25.71	c.23.5.1	31207
1u7nA	336	26.05	c.77.1.4	107726
1yxyA	234	28.40	c.1.2.5	124203
2ftsA	419	34.81	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
1n0qA	93	37.38	k.37.1.1	79754
1ihoA	283	37.48	c.26.1.4	62390
1gskA	513	43.16	b.6.1.3,b.6.1.3,b.6.1.3	83314,83315,83316
2pqqA	149	47.60		
1ka9H	200	47.80	c.23.16.1	77308
1ve4A	206	48.31	c.94.1.1	120012
1rknA	110	48.54	b.40.1.1	111855
1j4aA	333	49.51	c.2.1.4,c.23.12.1	71502,71503
1yf9A	171	49.63	d.20.1.1	123054
2hfxA	260	49.91		
1accA	735	50.99	f.11.1.1	43828
1awcB	153	53.54	d.211.1.1	19156
1a5t	334	53.86		
1n2eA	300	54.94	c.26.1.4	85268
2f6mA	65	55.45	a.2.17.1	133051
1qwkA	317	55.88	c.1.7.1	96482
2p65A	187	57.21		
1ixmA	192	59.52	d.123.1.1	41114
1vi1A	345	60.29	c.77.1.4	100724
2v82A	212	60.95		
1bkfA	107	65.88	d.26.1.1	38382
2i87A	364	67.25		
2uubK	129	68.74	c.55.4.1	139942
1kv7A	488	70.01	b.6.1.3,b.6.1.3,b.6.1.3	68873,68874,68875
1fr7A	260	75.06	b.74.1.1	27828
2r01A	210	75.16		
2iiaA	131	75.26		
7taa	478	77.08		
1unkA	87	78.15	a.28.2.1	16935
1igs	248	82.19		
2ao0A	324	84.16		
1vmiA	355	86.63	c.77.1.5	113678
1f6dA	376	87.16	c.87.1.3	35467
1o63A	219	87.28	c.94.1.1	92540
1cei	94	88.95