# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2az4A	429	6.020	d.157.1.10	127597
2ifaA	208	8.356	d.90.1.1	137329
3cm1A	139	11.15		
2iwkA	642	14.04		
2igqA	285	14.89		
2pd1A	104	15.76		
2hr2A	159	17.41		
1ihoA	283	17.41	c.26.1.4	62390
1nc7A	138	17.93	b.123.1.1	85549
1eajA	126	27.62	b.1.1.1	59401
2dbyA	368	28.42		
1yxyA	234	29.15	c.1.2.5	124203
1mb4A	370	31.45	c.2.1.3,d.81.1.1	78908,78909
1gskA	513	37.86	b.6.1.3,b.6.1.3,b.6.1.3	83314,83315,83316
1n2eA	300	38.57	c.26.1.4	85268
1n0qA	93	41.06	k.37.1.1	79754
2ftsA	419	42.21	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
1qwkA	317	44.77	c.1.7.1	96482
1accA	735	46.29	f.11.1.1	43828
2iiaA	131	49.06		
1bvyF	191	49.93	c.23.5.1	31207
2r01A	210	50.41		
2pqqA	149	53.86		
1awcB	153	55.63	d.211.1.1	19156
2p65A	187	58.41		
1hnrA	47	60.52	a.155.1.1	17896
1u7nA	336	60.92	c.77.1.4	107726
1k0dA	260	62.36	a.45.1.1,c.47.1.5	67930,67931
1ixmA	192	62.90	d.123.1.1	41114
7taa	478	64.65		
1yf9A	171	65.19	d.20.1.1	123054
1dbhA	354	65.56	a.87.1.1,b.55.1.1	18514,26967
1kv7A	488	66.05	b.6.1.3,b.6.1.3,b.6.1.3	68873,68874,68875
1ve4A	206	67.53	c.94.1.1	120012
1a5t	334	72.08		
1cei	94	72.99		
2ao0A	324	73.09		
2v82A	212	73.17		
1unkA	87	74.53	a.28.2.1	16935
1fwxA	595	75.00	b.6.1.4,b.69.3.1	60069,60070
2f6mA	65	75.78	a.2.17.1	133051
1ojhA	65	82.31	a.214.1.1	103976
2uubK	129	88.60	c.55.4.1	139942
1igs	248	88.67