# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2v82A	212	5.701		
2yw3A	207	13.48		
2az4A	429	14.45	d.157.1.10	127597
1jkeA	145	16.42	c.110.1.1	66791
2ifaA	208	20.55	d.90.1.1	137329
1j7gA	144	21.32	c.110.1.1	84130
1nc7A	138	24.17	b.123.1.1	85549
1igs	248	25.18		
2iwkA	642	28.45		
1fr7A	260	29.66	b.74.1.1	27828
1accA	735	32.31	f.11.1.1	43828
2nmxA	260	33.46	b.74.1.1	138382
2hfxA	260	33.76		
1hnrA	47	34.94	a.155.1.1	17896
1euaA	213	35.05	c.1.10.1	29155
1yxyA	234	36.79	c.1.2.5	124203
1lugA	259	43.11	b.74.1.1	91127
2c3zA	222	45.94		
2r6gF	514	48.45		
1n0qA	93	49.28	k.37.1.1	79754
1keqA	248	50.25	b.74.1.1	72387
1awcB	153	51.07	d.211.1.1	19156
1fwxA	595	52.09	b.6.1.4,b.69.3.1	60069,60070
1n2eA	300	53.33	c.26.1.4	85268
2dsyA	87	53.78		
1yo1A	260	54.03		
2nrrA	159	55.21		
1ympA	135	59.36		
1ihoA	283	59.91	c.26.1.4	62390
2b7nA	273	61.40		
2pqqA	149	62.58		
2fliA	220	63.19	c.1.2.2	133714
2iiaA	131	66.83		
2hr2A	159	69.52		
1acc	735	70.13		
1w78A	422	70.68		
1bkfA	107	71.52	d.26.1.1	38382
1mb4A	370	73.18	c.2.1.3,d.81.1.1	78908,78909
2omkA	231	80.63		
2igqA	285	81.44		
1o63A	219	89.19	c.94.1.1	92540