# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ihoA	283	12.47	c.26.1.4	62390
2ifaA	208	15.13	d.90.1.1	137329
2az4A	429	17.29	d.157.1.10	127597
1n2eA	300	17.73	c.26.1.4	85268
2iwkA	642	19.42		
2pd1A	104	20.54		
2hr2A	159	21.33		
1eajA	126	33.59	b.1.1.1	59401
2p65A	187	35.46		
1j4aA	333	36.21	c.2.1.4,c.23.12.1	71502,71503
1nc7A	138	36.40	b.123.1.1	85549
2igqA	285	37.36		
2hfxA	260	38.07		
1mb4A	370	38.35	c.2.1.3,d.81.1.1	78908,78909
2dbyA	368	39.10		
1yxyA	234	46.04	c.1.2.5	124203
2eefA	156	49.86		
1n0qA	93	57.86	k.37.1.1	79754
1qwkA	317	60.58	c.1.7.1	96482
1rknA	110	61.73	b.40.1.1	111855
1a5t	334	63.90		
2yw3A	207	64.07		
1ixmA	192	70.05	d.123.1.1	41114
2fxtA	192	70.80		
1u7nA	336	71.38	c.77.1.4	107726
1accA	735	72.15	f.11.1.1	43828
2iiaA	131	72.83		
1gskA	513	73.47	b.6.1.3,b.6.1.3,b.6.1.3	83314,83315,83316
1awcB	153	73.63	d.211.1.1	19156
1v8fA	276	75.13	c.26.1.4	100503
2pqqA	149	77.21		
2i87A	364	78.57		
1yf9A	171	79.63	d.20.1.1	123054
1kv7A	488	86.37	b.6.1.3,b.6.1.3,b.6.1.3	68873,68874,68875
2nmxA	260	89.46	b.74.1.1	138382
2uubK	129	89.50	c.55.4.1	139942