# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2iwkA	642	8.378		
2ifaA	208	9.220	d.90.1.1	137329
2az4A	429	16.18	d.157.1.10	127597
2hr2A	159	21.24		
2pd1A	104	22.05		
2igqA	285	22.13		
1accA	735	31.48	f.11.1.1	43828
2p65A	187	31.49		
1yxyA	234	31.86	c.1.2.5	124203
1nc7A	138	32.42	b.123.1.1	85549
1n2eA	300	33.42	c.26.1.4	85268
1mb4A	370	33.87	c.2.1.3,d.81.1.1	78908,78909
1fwxA	595	34.08	b.6.1.4,b.69.3.1	60069,60070
1yf9A	171	34.45	d.20.1.1	123054
1ihoA	283	36.57	c.26.1.4	62390
1u7nA	336	37.44	c.77.1.4	107726
1gskA	513	40.00	b.6.1.3,b.6.1.3,b.6.1.3	83314,83315,83316
2iiaA	131	41.55		
1a5t	334	42.71		
1eajA	126	44.34	b.1.1.1	59401
1kv7A	488	54.23	b.6.1.3,b.6.1.3,b.6.1.3	68873,68874,68875
1fjgK	129	61.42	c.55.4.1	33733
1n0qA	93	62.25	k.37.1.1	79754
2uubK	129	63.71	c.55.4.1	139942
1j4aA	333	64.16	c.2.1.4,c.23.12.1	71502,71503
2ao0A	324	68.67		
2eefA	156	69.37		
1awcB	153	70.52	d.211.1.1	19156
1bkfA	107	71.34	d.26.1.1	38382
2ftsA	419	72.64	b.85.6.1,b.103.1.1,c.57.1.2	134079,134080,134081
1qwkA	317	73.26	c.1.7.1	96482
2pqqA	149	73.65		
2ux7A	122	76.33		
2i87A	364	76.51		
1acc	735	76.52		
2pbcA	102	79.58