PFRMAT RR
TARGET T0407
AUTHOR 4008-1775-0004
REMARK From group SAM-TO6 under the direction of
REMARK Kevin Karplus.
REMARK Residue-residue contact predictions
REMARK  by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network.
METHOD NN: con.aa7str2_7near3nsep5.47.data03.net
METHOD Inputs may include separation and sequence length,
METHOD e-value statistic based on mutual information values,
METHOD a statistic based on propensity of residues in contact.
METHOD Other inputs are distributions from alignments and
METHOD secondary predictions from SAM-t04 and/or SAM-t06 of
METHOD the University of California, Santa Cruz
MODEL 1
IQTDYDFEKGEHRTMTFVFAKERSLQGIREALDNRRTAAYFHELLIGRED
LLRPFFEKCVKIEEVSRNEQGVTLSITNVTDLVLKLKKTAHDTLLVYFRD
MTLKPHTRYTVRIGFKQGIKGGDVNFEVTNFIVAPDKGLKYTISL
222 231 0 8 0.781623
222 232 0 8 0.825611
222 233 0 8 0.82313
222 234 0 8 0.774028
222 235 0 8 0.78614
222 236 0 8 0.74469
222 237 0 8 0.712172
222 238 0 8 0.641327
222 239 0 8 0.627045
223 232 0 8 0.831856
223 233 0 8 0.864362
223 234 0 8 0.806487
223 235 0 8 0.847429
223 236 0 8 0.783759
223 237 0 8 0.781331
223 238 0 8 0.687726
223 239 0 8 0.593164
223 246 0 8 0.6236
223 256 0 8 0.601446
223 257 0 8 0.594242
224 233 0 8 0.588739
225 234 0 8 0.643138
225 235 0 8 0.686999
229 238 0 8 0.590062
229 239 0 8 0.679047
229 240 0 8 0.597121
230 239 0 8 0.812436
230 240 0 8 0.73117
230 241 0 8 0.658297
230 246 0 8 0.618692
230 294 0 8 0.598378
231 240 0 8 0.815713
231 241 0 8 0.750016
231 245 0 8 0.581284
231 246 0 8 0.664896
231 256 0 8 0.599038
231 257 0 8 0.628806
231 258 0 8 0.631481
231 259 0 8 0.67898
231 260 0 8 0.605431
231 292 0 8 0.60393
231 293 0 8 0.672747
231 294 0 8 0.729469
231 295 0 8 0.662042
231 296 0 8 0.578498
232 241 0 8 0.6899
232 256 0 8 0.601978
232 257 0 8 0.620786
232 258 0 8 0.613643
232 259 0 8 0.641053
232 292 0 8 0.64459
232 293 0 8 0.720927
232 294 0 8 0.747997
232 295 0 8 0.693225
232 296 0 8 0.596974
232 331 0 8 0.586616
233 246 0 8 0.754497
233 249 0 8 0.644583
233 255 0 8 0.601292
233 256 0 8 0.822931
233 257 0 8 0.837163
233 258 0 8 0.796816
233 259 0 8 0.806639
233 280 0 8 0.637338
233 292 0 8 0.804743
233 293 0 8 0.768705
233 294 0 8 0.845451
233 295 0 8 0.702591
233 300 0 8 0.65326
233 302 0 8 0.67664
233 304 0 8 0.639427
233 314 0 8 0.67676
233 316 0 8 0.678328
233 329 0 8 0.687249
233 330 0 8 0.642938
233 331 0 8 0.783485
233 349 0 8 0.671612
233 350 0 8 0.63882
234 246 0 8 0.798484
234 249 0 8 0.693164
234 254 0 8 0.61552
234 255 0 8 0.673643
234 256 0 8 0.882559
234 257 0 8 0.897112
234 258 0 8 0.853262
234 259 0 8 0.840858
234 263 0 8 0.60386
234 270 0 8 0.606995
234 277 0 8 0.621448
234 278 0 8 0.613078
234 280 0 8 0.64087
234 292 0 8 0.803929
234 293 0 8 0.776871
234 294 0 8 0.851917
234 295 0 8 0.705124
234 296 0 8 0.589852
234 299 0 8 0.583567
234 300 0 8 0.757895
234 302 0 8 0.748898
234 304 0 8 0.657903
234 314 0 8 0.760671
234 315 0 8 0.674181
234 316 0 8 0.735801
234 319 0 8 0.577985
234 329 0 8 0.721678
234 330 0 8 0.658924
234 331 0 8 0.774061
234 346 0 8 0.608071
234 347 0 8 0.652047
234 348 0 8 0.672235
234 349 0 8 0.747205
234 350 0 8 0.706934
234 351 0 8 0.599051
235 245 0 8 0.638595
235 246 0 8 0.897258
235 249 0 8 0.814324
235 250 0 8 0.654682
235 254 0 8 0.73687
235 255 0 8 0.766206
235 256 0 8 0.95096
235 257 0 8 0.950849
235 258 0 8 0.912793
235 259 0 8 0.892497
235 263 0 8 0.664584
235 270 0 8 0.719141
235 273 0 8 0.659796
235 274 0 8 0.619312
235 277 0 8 0.737644
235 278 0 8 0.745407
235 280 0 8 0.784308
235 283 0 8 0.579672
235 290 0 8 0.696191
235 291 0 8 0.594482
235 292 0 8 0.901737
235 293 0 8 0.808724
235 294 0 8 0.90164
235 295 0 8 0.677058
235 299 0 8 0.624834
235 300 0 8 0.820406
235 301 0 8 0.585634
235 302 0 8 0.819527
235 304 0 8 0.690961
235 312 0 8 0.620637
235 313 0 8 0.589792
235 314 0 8 0.836935
235 315 0 8 0.718033
235 316 0 8 0.802544
235 319 0 8 0.62451
235 328 0 8 0.585879
235 329 0 8 0.846676
235 330 0 8 0.70439
235 331 0 8 0.835635
235 344 0 8 0.68374
235 346 0 8 0.713949
235 347 0 8 0.721715
235 348 0 8 0.726428
235 349 0 8 0.807322
235 350 0 8 0.745048
236 246 0 8 0.845269
236 249 0 8 0.702235
236 254 0 8 0.646361
236 255 0 8 0.734131
236 256 0 8 0.92836
236 257 0 8 0.921856
236 258 0 8 0.854526
236 259 0 8 0.812655
236 270 0 8 0.612004
236 277 0 8 0.668637
236 278 0 8 0.671088
236 280 0 8 0.698561
236 290 0 8 0.662937
236 292 0 8 0.810497
236 293 0 8 0.678076
236 294 0 8 0.796992
236 299 0 8 0.650931
236 300 0 8 0.815651
236 301 0 8 0.594081
236 302 0 8 0.761419
236 312 0 8 0.657159
236 313 0 8 0.629879
236 314 0 8 0.810016
236 315 0 8 0.691126
236 316 0 8 0.732022
236 327 0 8 0.615196
236 328 0 8 0.600258
236 329 0 8 0.768658
236 330 0 8 0.5929
236 331 0 8 0.665365
236 344 0 8 0.626493
236 346 0 8 0.673679
236 347 0 8 0.707895
236 348 0 8 0.725689
236 349 0 8 0.760102
236 350 0 8 0.675742
237 246 0 8 0.871913
237 249 0 8 0.71878
237 254 0 8 0.689063
237 255 0 8 0.778731
237 256 0 8 0.938975
237 257 0 8 0.930951
237 258 0 8 0.870034
237 259 0 8 0.831224
237 263 0 8 0.6034
237 270 0 8 0.641433
237 273 0 8 0.58478
237 277 0 8 0.694443
237 278 0 8 0.698343
237 280 0 8 0.680449
237 290 0 8 0.688841
237 292 0 8 0.756751
237 294 0 8 0.748912
237 299 0 8 0.695126
237 300 0 8 0.837262
237 301 0 8 0.61369
237 302 0 8 0.77673
237 312 0 8 0.708035
237 313 0 8 0.667148
237 314 0 8 0.822006
237 315 0 8 0.70123
237 316 0 8 0.740112
237 327 0 8 0.651255
237 329 0 8 0.745778
237 331 0 8 0.611362
237 344 0 8 0.6474
237 346 0 8 0.703366
237 347 0 8 0.729698
237 348 0 8 0.745668
237 349 0 8 0.759004
237 350 0 8 0.658794
238 249 0 8 0.73913
238 254 0 8 0.726589
238 255 0 8 0.771835
238 256 0 8 0.92315
238 257 0 8 0.91374
238 258 0 8 0.845686
238 259 0 8 0.81182
238 263 0 8 0.639855
238 270 0 8 0.650891
238 273 0 8 0.612605
238 277 0 8 0.720757
238 278 0 8 0.683793
238 280 0 8 0.671502
238 290 0 8 0.688705
238 292 0 8 0.678327
238 294 0 8 0.691232
238 298 0 8 0.577788
238 299 0 8 0.676337
238 300 0 8 0.818545
238 302 0 8 0.732405
238 312 0 8 0.697953
238 313 0 8 0.62587
238 314 0 8 0.777946
238 315 0 8 0.63459
238 316 0 8 0.671807
238 327 0 8 0.645153
238 329 0 8 0.667567
238 344 0 8 0.585948
238 346 0 8 0.638035
238 347 0 8 0.66358
238 348 0 8 0.68699
238 349 0 8 0.691069
238 350 0 8 0.594407
239 254 0 8 0.58147
239 255 0 8 0.600548
239 256 0 8 0.71305
239 257 0 8 0.678346
239 258 0 8 0.586701
240 257 0 8 0.578326
246 256 0 8 0.822456
246 257 0 8 0.825638
246 258 0 8 0.768065
246 259 0 8 0.765472
246 262 0 8 0.643636
246 263 0 8 0.698586
246 269 0 8 0.653365
246 270 0 8 0.715764
246 273 0 8 0.713945
246 274 0 8 0.631423
246 277 0 8 0.662426
246 280 0 8 0.628241
246 300 0 8 0.621009
246 302 0 8 0.582466
247 256 0 8 0.645844
247 257 0 8 0.59739
247 273 0 8 0.582266
249 258 0 8 0.698116
249 259 0 8 0.689231
249 262 0 8 0.591518
249 263 0 8 0.627123
249 270 0 8 0.645736
249 273 0 8 0.649185
249 277 0 8 0.634234
249 280 0 8 0.660907
249 292 0 8 0.577407
249 300 0 8 0.578741
250 259 0 8 0.750083
250 262 0 8 0.732031
250 263 0 8 0.732745
250 264 0 8 0.602901
250 269 0 8 0.672006
250 270 0 8 0.714102
250 273 0 8 0.712974
250 274 0 8 0.630785
250 277 0 8 0.728731
250 278 0 8 0.674576
250 280 0 8 0.724865
250 290 0 8 0.637167
250 292 0 8 0.579848
254 263 0 8 0.748181
254 264 0 8 0.612225
254 269 0 8 0.659643
254 270 0 8 0.716821
254 273 0 8 0.716597
254 274 0 8 0.626002
254 277 0 8 0.661744
254 278 0 8 0.603174
254 280 0 8 0.707855
254 283 0 8 0.654778
254 292 0 8 0.725653
254 294 0 8 0.769198
254 295 0 8 0.58782
254 300 0 8 0.664871
254 302 0 8 0.658388
254 304 0 8 0.651637
254 314 0 8 0.600096
254 316 0 8 0.59013
254 331 0 8 0.645235
255 280 0 8 0.668514
255 283 0 8 0.617342
255 292 0 8 0.758015
255 293 0 8 0.696644
255 294 0 8 0.778773
255 295 0 8 0.65955
255 302 0 8 0.578152
255 304 0 8 0.578108
255 331 0 8 0.65206
256 270 0 8 0.680659
256 273 0 8 0.663121
256 274 0 8 0.585049
256 277 0 8 0.646781
256 278 0 8 0.638348
256 280 0 8 0.74966
256 283 0 8 0.640005
256 290 0 8 0.667937
256 292 0 8 0.848576
256 293 0 8 0.735542
256 294 0 8 0.836979
256 295 0 8 0.664647
256 300 0 8 0.710057
256 302 0 8 0.731085
256 304 0 8 0.674315
256 314 0 8 0.720116
256 315 0 8 0.622203
256 316 0 8 0.683349
256 329 0 8 0.702571
256 330 0 8 0.583467
256 331 0 8 0.744762
256 349 0 8 0.668101
256 350 0 8 0.660247
257 269 0 8 0.624012
257 270 0 8 0.749094
257 273 0 8 0.722644
257 274 0 8 0.655807
257 277 0 8 0.697823
257 278 0 8 0.656713
257 280 0 8 0.746346
257 283 0 8 0.589317
257 290 0 8 0.628622
257 292 0 8 0.81975
257 293 0 8 0.647032
257 294 0 8 0.803031
257 299 0 8 0.623462
257 300 0 8 0.799616
257 302 0 8 0.780343
257 304 0 8 0.666982
257 312 0 8 0.606151
257 314 0 8 0.776474
257 315 0 8 0.653993
257 316 0 8 0.715102
257 329 0 8 0.709438
257 331 0 8 0.677812
257 346 0 8 0.605266
257 347 0 8 0.615441
257 348 0 8 0.627717
257 349 0 8 0.717044
257 350 0 8 0.67773
258 269 0 8 0.599333
258 270 0 8 0.707909
258 273 0 8 0.680687
258 274 0 8 0.606953
258 277 0 8 0.662978
258 278 0 8 0.619763
258 280 0 8 0.729801
258 290 0 8 0.616719
258 292 0 8 0.781744
258 293 0 8 0.587742
258 294 0 8 0.764018
258 299 0 8 0.638548
258 300 0 8 0.801561
258 302 0 8 0.754907
258 304 0 8 0.600181
258 312 0 8 0.616784
258 314 0 8 0.76445
258 315 0 8 0.63892
258 316 0 8 0.687341
258 329 0 8 0.680378
258 331 0 8 0.593926
258 346 0 8 0.597822
258 347 0 8 0.615562
258 348 0 8 0.630177
258 349 0 8 0.694738
258 350 0 8 0.633228
259 269 0 8 0.699718
259 270 0 8 0.777912
259 273 0 8 0.754441
259 274 0 8 0.683034
259 277 0 8 0.751189
259 278 0 8 0.690627
259 280 0 8 0.789561
259 283 0 8 0.59726
259 290 0 8 0.690617
259 292 0 8 0.781797
259 294 0 8 0.767656
259 298 0 8 0.589265
259 299 0 8 0.666222
259 300 0 8 0.823448
259 301 0 8 0.58555
259 302 0 8 0.77281
259 304 0 8 0.601429
259 312 0 8 0.647525
259 314 0 8 0.772323
259 315 0 8 0.621256
259 316 0 8 0.686889
259 329 0 8 0.680484
259 346 0 8 0.608497
259 347 0 8 0.600476
259 348 0 8 0.613967
259 349 0 8 0.67406
259 350 0 8 0.596892
260 269 0 8 0.638425
260 270 0 8 0.631748
260 273 0 8 0.627565
260 277 0 8 0.632816
260 280 0 8 0.682803
260 290 0 8 0.633667
260 292 0 8 0.634759
260 294 0 8 0.642313
260 298 0 8 0.594521
260 299 0 8 0.585249
260 300 0 8 0.608762
262 273 0 8 0.655257
262 277 0 8 0.593074
262 280 0 8 0.650017
262 294 0 8 0.599799
262 300 0 8 0.5868
263 273 0 8 0.773399
263 274 0 8 0.683402
263 277 0 8 0.694128
263 278 0 8 0.59563
263 280 0 8 0.699556
263 283 0 8 0.578276
263 292 0 8 0.608662
263 294 0 8 0.651433
263 300 0 8 0.721518
263 302 0 8 0.674861
263 304 0 8 0.586067
263 314 0 8 0.634079
264 273 0 8 0.702502
264 274 0 8 0.592698
264 277 0 8 0.593566
264 280 0 8 0.643097
264 294 0 8 0.583273
264 300 0 8 0.591491
266 280 0 8 0.584581
269 280 0 8 0.594245
270 280 0 8 0.8197
270 283 0 8 0.68331
270 290 0 8 0.667838
270 292 0 8 0.719674
270 294 0 8 0.697344
270 300 0 8 0.690883
270 302 0 8 0.686296
270 304 0 8 0.616796
270 314 0 8 0.602985
273 292 0 8 0.637774
273 294 0 8 0.608802
273 300 0 8 0.645204
273 302 0 8 0.626733
273 314 0 8 0.599081
274 283 0 8 0.757123
274 290 0 8 0.764491
274 292 0 8 0.807764
274 294 0 8 0.765525
274 300 0 8 0.726704
274 302 0 8 0.728558
274 304 0 8 0.662134
274 314 0 8 0.645353
274 316 0 8 0.595214
277 290 0 8 0.689724
277 292 0 8 0.820477
277 294 0 8 0.77517
277 300 0 8 0.717635
277 302 0 8 0.730769
277 304 0 8 0.694847
277 314 0 8 0.688355
277 316 0 8 0.642826
277 321 0 8 0.586829
277 329 0 8 0.613597
277 331 0 8 0.657676
277 349 0 8 0.614941
277 350 0 8 0.594395
278 290 0 8 0.840824
278 291 0 8 0.631666
278 292 0 8 0.922427
278 293 0 8 0.756577
278 294 0 8 0.890476
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278 300 0 8 0.734754
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278 314 0 8 0.683933
278 316 0 8 0.655128
278 319 0 8 0.624223
278 321 0 8 0.624838
278 329 0 8 0.661734
278 331 0 8 0.702527
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279 295 0 8 0.619507
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280 315 0 8 0.679646
280 316 0 8 0.768872
280 319 0 8 0.74784
280 321 0 8 0.721094
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280 328 0 8 0.612115
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280 330 0 8 0.663473
280 331 0 8 0.796739
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280 344 0 8 0.712012
280 346 0 8 0.678028
280 349 0 8 0.64803
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283 315 0 8 0.603777
283 316 0 8 0.664437
283 319 0 8 0.647903
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283 327 0 8 0.626317
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291 315 0 8 0.697062
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292 315 0 8 0.878704
292 316 0 8 0.915624
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292 318 0 8 0.71683
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292 320 0 8 0.591207
292 321 0 8 0.841664
292 323 0 8 0.577446
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292 329 0 8 0.937505
292 330 0 8 0.900152
292 331 0 8 0.9359
292 332 0 8 0.6264
292 333 0 8 0.651703
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292 344 0 8 0.802874
292 346 0 8 0.799299
292 347 0 8 0.725242
292 348 0 8 0.725833
292 349 0 8 0.811553
292 350 0 8 0.76806
292 351 0 8 0.607194
292 357 0 8 0.61805
292 359 0 8 0.776065
292 360 0 8 0.744384
293 302 0 8 0.846647
293 303 0 8 0.763317
293 304 0 8 0.743302
293 312 0 8 0.647232
293 313 0 8 0.744072
293 314 0 8 0.794538
293 315 0 8 0.785012
293 316 0 8 0.779765
293 317 0 8 0.6825
293 318 0 8 0.639163
293 319 0 8 0.707467
293 321 0 8 0.616145
293 326 0 8 0.633952
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293 328 0 8 0.825729
293 329 0 8 0.822033
293 330 0 8 0.808402
293 331 0 8 0.746738
293 332 0 8 0.578999
293 344 0 8 0.60864
293 346 0 8 0.587285
293 348 0 8 0.585334
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294 304 0 8 0.901691
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294 324 0 8 0.629759
294 325 0 8 0.683248
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END