# List of top-scoring protein chains for T0407.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2efpA	150	44.90		
2e7xA	150	51.62		
2pn6A	150	53.47		
2yx4A	150	53.77		
2bsyA	278	56.27	b.85.4.1,b.85.4.1	129129,129130
1ovlA	271	59.23	a.123.1.1	87455
1j2zA	270	59.42	b.81.1.1	90805
2b9mY	365	67.24		
2ihr1	365	67.82		
2jr5A	94	74.38		
1vl2A	421	77.81	c.26.2.1,d.210.1.1	108708,108709
1dmmA	131	79.93	d.17.4.3	38114
1dmnA	131	80.53	d.17.4.3	38115
1e97A	131	81.28	d.17.4.3	64803
1m9zA	111	83.98	g.7.1.3	78881
1w01A	131	87.09	d.17.4.3	108979