# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1k3xA	262	18.22	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1ebaA	215	20.93	b.1.2.1,b.1.2.1	22015,22016
2h2zA	306	23.00		
2zexA	147	25.74		
1wq8A	110	28.36	g.17.1.1	114832
1eq6A	189	30.10	d.107.1.1	40796
1iarB	207	42.17	b.1.2.1,b.1.2.1	22037,22038
2aw5A	541	42.98		
1ebpA	211	43.42	b.1.2.1,b.1.2.1	22023,22024
1fhoA	119	44.52	b.55.1.1	26982
1p5vA	235	44.71	b.1.11.1,b.7.2.1	87812,87813
2p22D	79	47.34		
1by5A	714	50.62	f.4.3.3	43800
1xfdA	723	50.70	b.70.3.1,c.69.1.24	115251,115252
3biyA	380	53.87		
1bg1A	722	56.81	a.47.1.1,b.2.5.5,d.93.1.1	17767,22461,40527
1rm8A	169	58.88	d.92.1.11	97660
1yukA	103	61.51		
2ywuA	181	62.42		
2djwA	92	63.56		
1m6yA	301	63.57	a.60.13.1,c.66.1.23	78716,78717
1i76A	163	64.79	d.92.1.11	61877
1khhA	198	69.73	c.66.1.16	68615
1lkkA	105	74.42	d.93.1.1	40412
1qr4B	186	80.94	b.1.2.1,b.1.2.1	21988,21989
1pguA	615	87.76	b.69.4.1,b.69.4.1	88069,88070