# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ebaA	215	14.99	b.1.2.1,b.1.2.1	22015,22016
1k3xA	262	16.16	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
2zexA	147	16.31		
1ebpA	211	20.71	b.1.2.1,b.1.2.1	22023,22024
1m6yA	301	20.76	a.60.13.1,c.66.1.23	78716,78717
1i76A	163	22.54	d.92.1.11	61877
1wq8A	110	24.27	g.17.1.1	114832
1fhoA	119	25.46	b.55.1.1	26982
2aw5A	541	32.07		
1pguA	615	32.97	b.69.4.1,b.69.4.1	88069,88070
2p22D	79	34.53		
1dyoA	160	37.11	b.18.1.7	23771
2nwbA	400	45.76		
1lkkA	105	47.37	d.93.1.1	40412
1wmhA	89	48.80	d.15.2.2	114744
1qmuA	380	51.92	b.3.2.1,c.56.5.1	22534,33827
2jmkA	111	56.84		
1jk3A	158	57.44	d.92.1.11	66790
1eq6A	189	58.17	d.107.1.1	40796
1omiA	248	58.58	b.82.3.3,a.4.5.4	87079,87080
1y0gA	191	59.16	b.61.6.1	116299
1u2xA	474	68.87	c.72.1.3	107622
1yukA	103	71.62		
1p5vA	235	71.78	b.1.11.1,b.7.2.1	87812,87813
1iarB	207	72.02	b.1.2.1,b.1.2.1	22037,22038
2djwA	92	78.18		
2ffsA	157	83.01	d.129.3.7	133391
1rm8A	169	83.82	d.92.1.11	97660
2j4hA	193	84.36		
1xfdA	723	84.84	b.70.3.1,c.69.1.24	115251,115252
1sra	151	85.31		
2h2zA	306	85.46		
1cd9B	215	87.67	b.1.2.1,b.1.2.1	22041,22042