# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ebaA	215	11.58	b.1.2.1,b.1.2.1	22015,22016
2zexA	147	21.05		
1ebpA	211	21.99	b.1.2.1,b.1.2.1	22023,22024
1wq8A	110	22.61	g.17.1.1	114832
1pguA	615	24.42	b.69.4.1,b.69.4.1	88069,88070
1fhoA	119	25.22	b.55.1.1	26982
1m6yA	301	25.65	a.60.13.1,c.66.1.23	78716,78717
1k3xA	262	26.80	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1i76A	163	32.06	d.92.1.11	61877
1wmhA	89	32.97	d.15.2.2	114744
2jmkA	111	34.04		
1dyoA	160	38.38	b.18.1.7	23771
2nwbA	400	43.86		
2p22D	79	45.31		
2aw5A	541	49.06		
1qmuA	380	50.59	b.3.2.1,c.56.5.1	22534,33827
2ffsA	157	55.50	d.129.3.7	133391
1iarB	207	57.92	b.1.2.1,b.1.2.1	22037,22038
2h2zA	306	61.08		
1omiA	248	61.81	b.82.3.3,a.4.5.4	87079,87080
1lkkA	105	63.13	d.93.1.1	40412
1yukA	103	66.33		
2djwA	92	71.86		
1cd9B	215	71.96	b.1.2.1,b.1.2.1	22041,22042
1eq6A	189	72.53	d.107.1.1	40796
1xfdA	723	73.71	b.70.3.1,c.69.1.24	115251,115252
1by5A	714	79.01	f.4.3.3	43800
1y0gA	191	79.46	b.61.6.1	116299
2hi1A	330	82.19		
2ywuA	181	82.33		
1jk3A	158	84.78	d.92.1.11	66790
1p5vA	235	87.07	b.1.11.1,b.7.2.1	87812,87813
1sra	151	87.83		
2h9eC	84	88.38	g.22.1.1	136254