# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2zexA 147 0.6896 1r9dA 787 2.081 c.7.1.1 104865 2aaaA 484 3.244 b.71.1.1,c.1.8.1 27777,28764 1nr0A 611 3.835 b.69.4.1,b.69.4.1 86078,86079 3ceyA 474 7.109 1b5uA 130 8.012 d.2.1.2 36453 1b7rA 130 8.209 d.2.1.2 36436 1ll0A 339 8.263 c.68.1.14 73995 1b7qA 130 9.261 d.2.1.2 36549 1xfsA 178 9.474 d.129.3.5 109589 2f7kA 327 10.96 1eq6A 189 11.66 d.107.1.1 40796 1b7nA 130 12.91 d.2.1.2 36468 1w99A 558 13.16 1b7lA 130 13.38 d.2.1.2 36515 2nwdX 130 14.20 d.2.1.2 138718 1bb3A 130 15.51 d.2.1.2 36544 1ebaA 215 16.67 b.1.2.1,b.1.2.1 22015,22016 1lmqA 129 16.82 d.2.1.2 36588 1w7cA 747 17.94 1u7bA 261 18.25 d.131.1.2,d.131.1.2 113083,113084 2dc1A 236 18.65 1k3xA 262 19.43 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 1el4A 195 20.45 a.39.1.5 59453 1hy7A 173 23.90 d.92.1.11 65957 1zrzA 364 24.65 2atfA 200 25.14 b.82.1.19 127290 1ebpA 211 25.52 b.1.2.1,b.1.2.1 22023,22024 2dy1A 665 28.56 1dyoA 160 29.85 b.18.1.7 23771 1mxgA 435 33.02 b.71.1.1,c.1.8.1 85193,85194 2g30A 258 34.55 b.1.10.1,d.105.1.1 134546,134547 2j3mA 572 35.41 2h2zA 306 36.48 1rm8A 169 39.02 d.92.1.11 97660 1wmhA 89 39.95 d.15.2.2 114744 1ll2A 333 41.74 c.68.1.14 74005 1qr6A 584 43.55 c.2.1.7,c.58.1.3 30293,33941 2csbA 519 46.19 a.60.2.4,a.60.2.4,a.60.2.4,a.60.2.4,a.267.1.1 130751,130752,130753,130754,130755 1zncA 266 46.40 b.74.1.1 27955 2fphX 165 47.87 1lz1 130 48.54 7ceiB 206 49.94 d.4.1.1 37134 1es4A 262 52.01 e.3.1.1 42683 1b5xA 130 53.93 d.2.1.2 36550 2d1eA 248 54.03 1qmuA 380 55.31 b.3.2.1,c.56.5.1 22534,33827 1zejA 293 57.32 1wjnA 97 57.77 d.15.1.1 114703 1b7mA 130 58.39 d.2.1.2 36569 1b5wA 130 61.08 d.2.1.2 36557 1wq8A 110 61.58 g.17.1.1 114832 1ledA 243 61.81 b.29.1.1 24039 1b8yA 167 64.31 d.92.1.11 40377 1i76A 163 64.38 d.92.1.11 61877 2aaa 484 64.59 1x9lA 149 64.73 b.2.10.1 109528 2obeA 932 65.38 2ggrA 76 65.67 1yw5A 177 65.73 1ytbA 180 67.12 d.129.1.1,d.129.1.1 41276,41277 1ca9A 192 67.66 b.8.1.1,h.1.2.1 23244,45451 1fhoA 119 67.88 b.55.1.1 26982 3bt3A 148 69.24 1askA 127 70.17 d.17.4.2 38094 1dtyA 429 70.81 c.67.1.4 34495 1jmcA 246 70.84 b.40.4.3,b.40.4.3 25300,25301 2gfhA 260 71.54 c.108.1.6 135096 1b7oA 130 72.51 d.2.1.2 36491 2djwA 92 73.64 2bzyA 67 74.67 2p22D 79 75.05 2imqX 282 75.76 1ecrA 309 75.89 e.2.1.1 42678 2z8gA 549 77.92 1xuvA 178 78.24 d.129.3.5 116069 1r13A 148 78.61 d.169.1.1,h.1.1.1 96782,96783 1yzsA 121 78.77 2dt4A 143 79.21 1umsA 174 79.25 d.92.1.11 40368 1m7vA 363 82.62 d.174.1.1 78748 1dhs 344 83.48 2aw5A 541 85.08 2f4mA 295 86.60 2admA 421 86.75 c.66.1.27,d.287.1.1 111611,111612 1skf 262 86.78 2d00A 109 87.72 1u8xX 472 87.85 c.2.1.5,d.162.1.2 107741,107742