# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ebaA	215	16.51	b.1.2.1,b.1.2.1	22015,22016
1i76A	163	25.38	d.92.1.11	61877
2h2zA	306	28.51		
2zexA	147	28.88		
1wq8A	110	32.87	g.17.1.1	114832
1pguA	615	33.17	b.69.4.1,b.69.4.1	88069,88070
2djwA	92	34.62		
2aw5A	541	36.94		
2p22D	79	47.16		
1fhoA	119	47.66	b.55.1.1	26982
1ebpA	211	50.67	b.1.2.1,b.1.2.1	22023,22024
1b8tA	192	52.69	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	45135,45136,45137,45138
2jmkA	111	52.94		
1yukA	103	54.76		
2ywuA	181	54.84		
1b8yA	167	57.10	d.92.1.11	40377
1rm8A	169	57.37	d.92.1.11	97660
1p5vA	235	57.46	b.1.11.1,b.7.2.1	87812,87813
1jk3A	158	62.30	d.92.1.11	66790
1cxvA	164	64.40	d.92.1.11	40404
1k3xA	262	67.95	a.156.1.2,b.113.1.1,g.39.1.8	77242,77243,77244
1qmuA	380	71.70	b.3.2.1,c.56.5.1	22534,33827
1ylnA	252	79.26	b.45.2.1,b.45.2.2	123657,123658
830cA	168	79.98	d.92.1.11	40400
1omiA	248	82.28	b.82.3.3,a.4.5.4	87079,87080
1m6yA	301	82.90	a.60.13.1,c.66.1.23	78716,78717
1qg3A	195	82.97	b.1.2.1,b.1.2.1	21993,21994
1iarB	207	83.86	b.1.2.1,b.1.2.1	22037,22038
1xfdA	723	84.88	b.70.3.1,c.69.1.24	115251,115252
1by5A	714	86.21	f.4.3.3	43800
1dyoA	160	88.67	b.18.1.7	23771
1b5l	172	89.39