# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h2zA 306 5.238 1uiuA 502 7.389 c.94.1.1 99434 2amdA 311 10.53 1qr4B 186 10.57 b.1.2.1,b.1.2.1 21988,21989 1zo2A 129 12.70 2cq2A 114 14.29 d.58.7.1 130713 1quqA 129 15.05 b.40.4.3 25303 2nooA 502 15.94 1bg1A 722 16.17 a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1o63A 219 17.06 c.94.1.1 92540 2qgqA 304 21.79 1cfb 205 23.28 1hcz 252 24.47 1cfbA 205 25.28 b.1.2.1,b.1.2.1 21991,21992 1nrzA 164 25.63 c.38.1.1 86131 2pa8L 92 25.90 1w79A 489 26.48 e.3.1.3 120680 1nkiA 135 26.50 d.32.1.2 91941 1ci3M 249 28.40 b.2.6.1,b.84.2.2 22480,28266 1zlqA 502 28.42 c.94.1.1 125253 2pmvA 399 31.58 1ten 90 32.27 1lvoA 302 34.30 b.47.1.4 74284 1q2wA 308 34.56 b.47.1.4 88355 1zsoA 164 39.23 b.166.1.1 125610 2pi2A 270 39.34 2cw9A 194 39.65 d.17.4.13 130920 1guiA 155 39.80 b.18.1.14 76351 1vd3A 217 41.30 1r45A 204 41.68 d.166.1.1 111683 1tenA 90 41.82 b.1.2.1 21990 1zbpA 273 42.41 e.61.1.1 124861 1el6A 219 43.49 d.182.1.1 42606 1ugpB 226 44.80 b.34.4.4 107832 1ecrA 309 44.98 e.2.1.1 42678 1ufwA 95 46.01 d.58.7.1 99358 2p39A 155 47.96 1j5uA 136 52.09 d.208.1.1 71584 1ve4A 206 52.87 c.94.1.1 120012 1gybA 125 53.18 d.17.4.2 70744 2pqcA 445 54.00 1twyA 290 55.97 c.94.1.1 112767 1jroB 777 57.29 d.41.1.1,d.133.1.1 67141,67142 1qr4A 186 59.00 b.1.2.1,b.1.2.1 21986,21987 1agiA 125 59.50 d.5.1.1 37303 1hcgA 241 60.62 b.47.1.2 26341 1e2wA 251 62.86 b.2.6.1,b.84.2.2 22466,28252 1p5vA 235 63.68 b.1.11.1,b.7.2.1 87812,87813 1ucyH 150 66.14 1ypvA 313 66.24 1b5eA 246 70.26 d.117.1.1 41056 2rb8A 104 71.79 2zfdB 123 73.27 1dy5A 124 73.60 d.5.1.1 37163 1n3jA 119 73.93 b.85.7.2 79963 1jb2A 127 75.67 d.17.4.2 71624 2fywA 267 77.20 c.135.1.1 134408 2p25A 126 78.08 1zx2A 147 78.73 3c18A 290 79.27 1xxaA 78 81.17 d.74.2.1 39700 1fecA 490 81.41 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2aaaA 484 81.42 b.71.1.1,c.1.8.1 27777,28764 2qcpX 80 81.63 1k7kA 221 82.43 c.51.4.1 72104 1xuqA 212 82.55 1eq9A 222 83.22 b.47.1.2 26068 3cnxA 170 84.09 1zeqX 84 84.57 1r9wA 145 85.05 d.89.1.2 97264 2ampA 304 85.58 b.47.1.4 127021 2hazA 105 86.60 b.1.2.1 136303 2i6vA 87 87.43 1f5jA 199 89.56 b.29.1.11 24342