# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ol1A	147	16.76		
1q5hA	147	21.20	b.85.4.1	95893
2bsyA	278	22.54	b.85.4.1,b.85.4.1	129129,129130
1dunA	134	24.53	b.85.4.1	28371
1wyuA	438	27.73	c.67.1.7	121452
2gysA	419	28.47	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
2o6pA	161	28.82		
2jmkA	111	30.67		
1s0pA	176	33.48	a.192.1.1	98300
1sraA	151	34.19	a.39.1.3	17190
2p22D	79	38.13		
2fqxA	318	38.47		
1x9lA	149	48.83	b.2.10.1	109528
1f42A	306	55.98	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2yz1A	120	56.31		
1e5pA	151	56.43	b.60.1.1	59272
4ubpC	570	60.95	b.92.1.1,c.1.9.2	28431,29053
2p9oA	169	63.53		
1sra	151	64.60		
2bzyA	67	66.09		
2j5wA	1065	67.28	b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3	138067,138068,138069,138070,138071
1hfcA	169	70.78	d.92.1.11	40335
2h2zA	306	72.00		
2r4iA	123	73.25		
2jg0A	535	75.01		
1euwA	152	75.12	b.85.4.1	28349
2nttA	217	77.54		
1os8A	223	79.28	b.47.1.1	93481
2o01H	75	81.51		
1keqA	248	83.40	b.74.1.1	72387
1in0A	163	86.54	d.58.49.1,d.58.49.1	83694,83695
2gujA	155	87.74		
2b5iC	199	89.72	b.1.2.1,b.1.2.1	127898,127899
1b5l	172	89.74		
1i76A	163	89.78	d.92.1.11	61877