# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2p22D	79	27.18		
2ol1A	147	30.92		
1dunA	134	34.49	b.85.4.1	28371
1q5hA	147	36.72	b.85.4.1	95893
1s0pA	176	39.91	a.192.1.1	98300
2o6pA	161	40.78		
1sraA	151	41.42	a.39.1.3	17190
2gysA	419	42.29	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
2bsyA	278	45.83	b.85.4.1,b.85.4.1	129129,129130
1f42A	306	48.18	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2nttA	217	56.04		
2jmkA	111	58.81		
1b5l	172	61.71		
1x9lA	149	64.85	b.2.10.1	109528
1wyuA	438	68.11	c.67.1.7	121452
1b5lA	172	68.21	a.26.1.3	16900
2bzyA	67	72.40		
1ep8A	112	75.78	c.47.1.1	64907
2gujA	155	76.58		
1t6lA	290	77.16	d.131.1.2,d.131.1.2	106574,106575
2p9oA	169	79.68		
1os8A	223	80.46	b.47.1.1	93481
2jg0A	535	81.21		
2fqxA	318	85.99		
1euwA	152	86.34	b.85.4.1	28349
1in0A	163	88.14	d.58.49.1,d.58.49.1	83694,83695