# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ol1A	147	20.07		
1q5hA	147	25.14	b.85.4.1	95893
2h2zA	306	31.77		
1dunA	134	32.22	b.85.4.1	28371
2o6pA	161	32.38		
2bsyA	278	33.28	b.85.4.1,b.85.4.1	129129,129130
2gysA	419	36.00	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
2nttA	217	39.27		
2p22D	79	42.90		
2fqxA	318	45.10		
1sraA	151	45.70	a.39.1.3	17190
1s0pA	176	47.32	a.192.1.1	98300
1wyuA	438	50.46	c.67.1.7	121452
2jmkA	111	53.52		
2bzyA	67	56.62		
1t6lA	290	57.09	d.131.1.2,d.131.1.2	106574,106575
2bh1X	96	59.44		
1f42A	306	64.44	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2p9wA	334	65.48		
1ep8A	112	67.02	c.47.1.1	64907
2j5wA	1065	69.28	b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3	138067,138068,138069,138070,138071
2vngA	180	78.84		
2jg0A	535	78.89		
1keqA	248	79.51	b.74.1.1	72387
4ubpC	570	79.54	b.92.1.1,c.1.9.2	28431,29053
1os8A	223	80.82	b.47.1.1	93481
1euwA	152	82.18	b.85.4.1	28349
1x9lA	149	83.47	b.2.10.1	109528
1sra	151	85.00		
1i76A	163	85.08	d.92.1.11	61877
2p9oA	169	88.94