# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2p22D	79	24.76		
2ol1A	147	24.91		
2jmkA	111	27.54		
2nttA	217	27.73		
1s0pA	176	31.75	a.192.1.1	98300
1sraA	151	32.15	a.39.1.3	17190
1q5hA	147	33.90	b.85.4.1	95893
1wyuA	438	34.85	c.67.1.7	121452
2bsyA	278	40.84	b.85.4.1,b.85.4.1	129129,129130
2gysA	419	45.70	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
1dunA	134	46.91	b.85.4.1	28371
1f42A	306	47.32	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2o6pA	161	50.31		
2p9wA	334	53.03		
2gujA	155	53.64		
2bzyA	67	57.13		
1b5lA	172	63.06	a.26.1.3	16900
1b5l	172	63.13		
1sra	151	63.95		
2bh1X	96	64.21		
1jdcA	429	67.61	b.71.1.1,c.1.8.1	27789,28776
1t6lA	290	68.21	d.131.1.2,d.131.1.2	106574,106575
2yz1A	120	76.53		
1x9lA	149	82.75	b.2.10.1	109528
2gykB	134	82.76	d.4.1.1	135857
2fqxA	318	86.70		
2h2zA	306	88.23		
2p9oA	169	88.27		
2p5qA	170	88.68		
2z43A	324	88.85		
1fo0B	112	88.91	b.1.1.1	20631