# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ol1A	147	23.10		
1q5hA	147	26.22	b.85.4.1	95893
2p22D	79	29.44		
1f42A	306	36.61	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
1dunA	134	40.98	b.85.4.1	28371
1euwA	152	45.72	b.85.4.1	28349
1sraA	151	46.38	a.39.1.3	17190
1s0pA	176	47.70	a.192.1.1	98300
1c7kA	132	48.36	d.92.1.1	59078
1b5lA	172	49.35	a.26.1.3	16900
2gysA	419	51.29	b.1.2.1,b.1.2.1,b.1.2.1,b.1.2.1	135865,135866,135867,135868
2p9wA	334	51.87		
2jmkA	111	54.52		
2bsyA	278	55.47	b.85.4.1,b.85.4.1	129129,129130
1b5l	172	59.43		
2bzyA	67	61.48		
2r4iA	123	65.97		
1wyuA	438	67.02	c.67.1.7	121452
2p9oA	169	69.03		
1ly1A	181	73.52	c.37.1.1	74334
1rlrA	761	73.60	a.98.1.1,c.7.1.2	18753,30679
3cjlA	88	74.00		
2bh1X	96	74.39		
2o6pA	161	74.43		
2h2zA	306	75.87		
1keqA	248	81.84	b.74.1.1	72387
2bemA	170	83.48	b.1.18.2	116698
1widA	130	88.53	b.142.1.2	114667