# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1dyoA	160	1.432	b.18.1.7	23771
1neuA	124	4.738	b.1.1.1	19704
2ggrA	76	17.01		
1qj8A	148	17.53	f.4.1.1	43744
1f7dA	136	17.91	b.85.4.1	28353
1dunA	134	18.47	b.85.4.1	28371
2ol1A	147	21.19		
1aipA	405	23.16	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
1wmhA	89	32.14	d.15.2.2	114744
1usuB	170	33.62	d.83.2.1	99886
2p22D	79	37.75		
2fikA	287	38.92	b.1.1.2,d.19.1.1	133524,133525
1b5lA	172	43.57	a.26.1.3	16900
1xc3A	302	46.78	c.55.1.10,c.55.1.10	115102,115103
2jmkA	111	48.41		
1x9lA	149	53.12	b.2.10.1	109528
1hy7A	173	54.38	d.92.1.11	65957
1cfb	205	56.11		
1eerB	227	56.47	b.1.2.1,b.1.2.1	22011,22012
1twfC	318	57.51	d.74.3.1,d.181.1.1	112727,112728
1v87A	114	57.56	g.44.1.1	108422
1f42A	306	58.31	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2h26A	291	60.99	b.1.1.2,d.19.1.1	135990,135991
1eqfA	280	62.19	a.29.2.1,a.29.2.1	16972,16973
1m9zA	111	67.89	g.7.1.3	78881
2o01H	75	69.98		
2fgsA	179	77.75		
1y1nA	291	78.78		
1yukA	103	82.79		
1zjkA	403	83.72	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
2gujA	155	83.93		
2gykB	134	85.59	d.4.1.1	135857
1a1aA	107	87.04	d.93.1.1	40449