# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1dyoA	160	2.278	b.18.1.7	23771
1neuA	124	3.698	b.1.1.1	19704
2ggrA	76	12.33		
1qj8A	148	20.96	f.4.1.1	43744
1dunA	134	21.15	b.85.4.1	28371
1f7dA	136	22.17	b.85.4.1	28353
1usuB	170	22.54	d.83.2.1	99886
1aipA	405	26.73	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
2ol1A	147	29.87		
1wmhA	89	30.95	d.15.2.2	114744
2jmkA	111	35.95		
1v87A	114	36.37	g.44.1.1	108422
2p22D	79	37.55		
1f42A	306	41.34	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2fikA	287	45.85	b.1.1.2,d.19.1.1	133524,133525
1y1nA	291	48.01		
1cfb	205	49.89		
1b5lA	172	50.97	a.26.1.3	16900
1xc3A	302	52.64	c.55.1.10,c.55.1.10	115102,115103
1twfC	318	55.54	d.74.3.1,d.181.1.1	112727,112728
1hy7A	173	57.94	d.92.1.11	65957
1kopA	223	65.26	b.74.1.1	27966
1m9zA	111	65.36	g.7.1.3	78881
1x9lA	149	65.76	b.2.10.1	109528
2ft6A	124	67.17		
2h26A	291	71.40	b.1.1.2,d.19.1.1	135990,135991
1yukA	103	75.76		
1eqfA	280	77.53	a.29.2.1,a.29.2.1	16972,16973
2vgpA	284	78.60		
2o6pA	161	87.55		
2rkuA	294	89.58