# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1dyoA	160	3.614	b.18.1.7	23771
2rkuA	294	16.06		
2p22D	79	16.53		
1b5lA	172	28.49	a.26.1.3	16900
1cfb	205	31.21		
1hy7A	173	35.90	d.92.1.11	65957
1ri5A	298	37.11	c.66.1.34	97502
1twuA	139	37.36	d.32.1.8	107413
1xppA	115	39.10	d.74.3.2	115768
1cfbA	205	45.60	b.1.2.1,b.1.2.1	21991,21992
1wh0A	134	50.06	b.15.1.3	114628
1r9fA	136	50.86	d.255.1.1	97257
1zjkA	403	51.41	b.47.1.2,g.18.1.1,g.18.1.1	125149,125150,125151
1f7dA	136	56.29	b.85.4.1	28353
1au1A	166	56.96	a.26.1.3	16889
1eerB	227	59.86	b.1.2.1,b.1.2.1	22011,22012
2owbA	335	60.49		
3cmbA	283	63.15		
2cxvA	219	65.37	b.47.1.4	131012
1dunA	134	65.49	b.85.4.1	28371
2ab5A	269	67.37		
2jmkA	111	69.62		
2ol1A	147	69.66		
3brvB	70	69.69		
2ft6A	124	70.85		
2bycA	137	72.72	d.58.10.2	129476
2ffsA	157	73.60	d.129.3.7	133391
1f42A	306	75.43	b.1.1.4,b.1.2.1,b.1.2.1	59636,59637,59638
2nttA	217	81.40		
1qg3A	195	82.17	b.1.2.1,b.1.2.1	21993,21994
3coxA	507	88.21	c.3.1.2,d.16.1.1	30332,37863
2qsvA	220	88.70