# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2hi2A 158 1.463 1dyoA 160 1.818 b.18.1.7 23771 1pc3A 350 2.828 c.94.1.1 104102 1hy7A 173 3.487 d.92.1.11 65957 1yloA 348 4.991 b.49.3.1,c.56.5.4 123659,123660 1ll2A 333 5.475 c.68.1.14 74005 1aipA 405 6.943 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 1u04A 771 9.093 b.34.14.1,c.55.3.10 107539,107540 2v3vA 723 9.639 2hpuA 175 10.11 1o0xA 262 10.66 d.127.1.1 80755 2inuA 410 13.06 1neuA 124 13.06 b.1.1.1 19704 1nr0A 611 14.47 b.69.4.1,b.69.4.1 86078,86079 2g30A 258 15.99 b.1.10.1,d.105.1.1 134546,134547 2ggrA 76 18.58 1ef1A 294 19.28 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1olmA 403 21.71 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 2nyhA 117 22.80 d.58.55.1 138813 1f6fB 210 23.75 b.1.2.1,b.1.2.1 22033,22034 2aaa 484 23.81 2coiA 386 23.95 1r9dA 787 24.56 c.7.1.1 104865 1cfb 205 24.68 2zexA 147 24.89 2ptzA 432 25.41 1fecA 490 25.68 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2p9wA 334 26.01 2vafA 378 26.29 1wmhA 89 28.62 d.15.2.2 114744 1aw2A 256 29.13 c.1.1.1 28523 3c0cA 73 29.86 1lz1 130 30.89 2gfhA 260 31.26 c.108.1.6 135096 1sat 471 32.73 1f7dA 136 35.58 b.85.4.1 28353 1qxyA 252 38.91 d.127.1.1 96565 1fo0B 112 39.47 b.1.1.1 20631 2e26A 725 39.60 1uumA 372 40.80 c.1.4.1 100010 2gu1A 361 40.90 1usuB 170 41.70 d.83.2.1 99886 2f2fA 222 41.74 b.42.2.1 132810 1qr6A 584 41.91 c.2.1.7,c.58.1.3 30293,33941 2halA 212 42.28 b.47.1.4 136289 1x9lA 149 43.58 b.2.10.1 109528 2c81A 418 44.54 1gz8A 299 47.11 d.144.1.7 83405 2j3mA 572 47.17 1g9zA 152 47.62 d.95.2.1 60408 3dni 260 47.83 2aaaA 484 47.86 b.71.1.1,c.1.8.1 27777,28764 2yzjA 169 54.73 2b4aA 138 56.79 c.23.1.1 127817 1y1nA 291 58.63 2ahuA 531 58.65 c.124.1.3,c.124.1.2 126785,126786 2cftA 298 59.15 1rfs 139 59.62 1twfC 318 61.70 d.74.3.1,d.181.1.1 112727,112728 1c24A 263 63.06 d.127.1.1 41148 1c8zA 265 63.44 d.23.1.1 38375 1a1aA 107 65.55 d.93.1.1 40449 1bdoA 80 65.68 b.84.1.1 28214 2cn3A 737 66.08 2p22D 79 66.40 2d73A 738 69.13 1zrzA 364 69.87 1r85A 379 71.52 c.1.8.3 104839 3cbwA 353 72.09 1q25A 432 73.39 b.64.1.1,b.64.1.1,b.64.1.1 104493,104494,104495 1qv1A 195 74.98 a.39.1.5 96347 2f1lA 187 76.47 b.41.1.4,b.43.3.4 132780,132781 1rfzA 168 76.69 a.195.1.1 97411 2epiA 100 76.78 2i7vA 459 77.28 1y93A 159 78.44 d.92.1.11 122772 1suuA 312 79.04 b.68.10.1 99006 1e3aB 560 79.35 1sjgA 112 81.60 b.33.1.1 105647 1kcxA 518 82.53 b.92.1.3,c.1.9.6 90953,90954 1rypG 244 82.89 d.153.1.4 41938 1q35A 320 83.33 c.94.1.1 95661 2obeA 932 84.16 2r47A 157 85.36 1satA 471 86.48 b.80.7.1,d.92.1.6 28014,40300 2ft6A 124 87.52 2fphX 165 87.53 2p8iA 117 87.65 d.58.55.1 139522 1r13A 148 89.49 d.169.1.1,h.1.1.1 96782,96783 1gc5A 467 89.50 c.72.1.3 60429 2p17A 277 89.72